Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t01683.2
CDS Infomation

gene=orange1.1t01683
Sequence

ATGGTGTCCAGAGCAAGCGACTCCTCCTCTAAATCCAGAAAGTCCTATAGCGAGCAGTCT
AATGATGGTCTTGGAAATTTGACATATAAGCTAAATCAGCTCAAGAAGCAAGTTCAAGCG
GAGAGAGTTGTTTCAGTAAAAGATAAAATTGAGAAGAATAGAAAGAAAATTGAAAATGAT
ATTTCTCAGCTTTTGTCTACAACATCAAGAAAGAGTGTTATATTTGCGATGGATAATGGA
TTTGGTAACATGCCTCTCTGCAAATACAGTGGATTTCCTCAAGGACTGGGAGATAGAGAC
TATGTCAACAGTCATGAGGTTGTGCTCTCAACAAGTAGCAAGCTTTCACATGTTCAGAAG
ATACCGCCGTATACCACTTGGATCTTCTTGGACAAAAATCAGAGAATGGCTGAAGACCAG
TCAGTGGTTGGGAGAAGACGTATATATTATGATCAACATGGAAGCGAAGCACTAGTCTGC
AGTGACAGTGAGGAAGACATTATAGAACCTGAGGAGGAGAAACATGAATTCTCTGATGGT
GAAGATCGTATTCTATGGACGGTATTTGAGGAGCATGGGCTAGGTGAGGAAGTAATAAAT
GCTGTGAGCCAGTTCATTGGAATAGCCACCTCGGAAGTACAGGATAGATACAGCACACTA
AAGGAGAAATATGATGGAAAAAACTTGAAGGAATTTGAGGATGCCGGACATGAAAGGGGG
ATTGCTCTGGAGAAGAGCCTAAGTGCTGCTTTGGATTCTTTTGATAACCTCTTTTGTCGC
CGTTGCTTGTTATTTGACTGCCGTCTGCATGGATGTTCCCAAACTTTGATTAATCCTAGT
GAGAAGCAACCTTATTGGTCTGAATATGAAGATGATAGGAAACCTTGCAGCAATCATTGT
TACCTTCAGTCAAGAGCTGTTCAGGATACAGTAGAGGGGTCAGCTGGTAATATCTCTAGT
ATAATAACAAATACAGAAGGGACTTTACTGCACTGCAATGCTGAAGTGCCAGGTGCTCAT
AGTGACATCATGGCAGGTGAAAGATGCAATTCCAAAAGGGTGTTACCTGTTACATCAGAA
GCTGTGGACAGCTCAGAAGTTGCTATTGGTAATGAAAATACAGATACTTCAATGCAAAGT
TTGGGAAAGCGCAAAGCTTTAGAGCTAAATGACTCAGTAAAAGTTTTCGATGAAATTGAG
GAATCTTTAAATAAGAAACAAAAGAAACTGTTGCCTTTGGATGTACTTACAGCATCAAGT
GATGGTATACCACGTCCAGACACCAAAAGTGGGCACCATGTTGGTGCAATCAATGACAAT
GAACTTCAAATGACCTCCAAAAATACAATAAAGAAATCTGTTAGTGCTAAAGTTGTTTCC
CATAATAATATTGAGCACAATATAATGGATGGAGCCAAAGATGTCAATAAAGAGCCTGAG
ATGAAGCAGTCATTTTCCAAAGGAGAACTGCCTGAAGGAGTCTTGTGCAGCTCTGAGTGG
AAACCTATTGAGAAAGAACTATACTTGAAAGGAGTGGAGATATTTGGGAGAAACAGTTGC
CTTATAGCCAGAAATTTACTTTCTGGTCTGAAGACTTGCATGGAAGTTTCTACTTACATG
CGTGACAGTAGTTCTTCAATGCCCCATAAATCTGTTGCACCAAGCTCCTTTTTGGAAGAA
ACTGTGAAAGTTGATACAGATTATGCAGAGCAAGAGATGCCTGCAAGACCACGGTTGCTT
CGTAGAAGAGGAAGAGCACGGAAACTTAAATATTCTTGGAAGTCCGCTGGCCATCCATCA
ATTTGGAAAAGAATTGCAGATGGTAAAAATCAATCTTGTAAGCAGTATACCCCATGTGGG
TGCCAGTCTATGTGTGGAAAGCAGTGCCCTTGTCTGCATAATGGAACATGCTGTGAAAAA
TACTGCGGGTGCTCGAAGAGTTGCAAAAACCGGTTCAGGGGATGCCACTGTGCAAAGAGT
CAATGTCGAAGCAGGCAATGTCCATGCTTTGCTGCTGGACGTGAATGTGACCCAGATGTT
TGCCGGAATTGCTGGGTTAGTTGTGGGGATGGTTCATTGGGTGAGCCACCCAAACGAGGA
GATGGTCAATGTGGTAACATGAGGCTGCTTCTAAGGCAGCAACAGAGGATACTCTTGGCA
AAGTCTGATGTTGCTGGATGGGGAGCCTTTTTAAAGGTAGGGTAA

Peptide Sequence

PEP ID

orange1.1t01683.2
PEP Infomation
Sequence

MVSRASDSSSKSRKSYSEQSNDGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIEND
ISQLLSTTSRKSVIFAMDNGFGNMPLCKYSGFPQGLGDRDYVNSHEVVLSTSSKLSHVQK
IPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEEKHEFSDG
EDRILWTVFEEHGLGEEVINAVSQFIGIATSEVQDRYSTLKEKYDGKNLKEFEDAGHERG
IALEKSLSAALDSFDNLFCRRCLLFDCRLHGCSQTLINPSEKQPYWSEYEDDRKPCSNHC
YLQSRAVQDTVEGSAGNISSIITNTEGTLLHCNAEVPGAHSDIMAGERCNSKRVLPVTSE
AVDSSEVAIGNENTDTSMQSLGKRKALELNDSVKVFDEIEESLNKKQKKLLPLDVLTASS
DGIPRPDTKSGHHVGAINDNELQMTSKNTIKKSVSAKVVSHNNIEHNIMDGAKDVNKEPE
MKQSFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYM
RDSSSSMPHKSVAPSSFLEETVKVDTDYAEQEMPARPRLLRRRGRARKLKYSWKSAGHPS
IWKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKS
QCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLA
KSDVAGWGAFLKVG*

Transcript Sequence

Transcript ID

orange1.1t01683.2
Transcript Infomation

gene=orange1.1t01683 CDS=16-2220
Sequence

AGAGCATAGCCAAGAATGGTGTCCAGAGCAAGCGACTCCTCCTCTAAATCCAGAAAGTCC
TATAGCGAGCAGTCTAATGATGGTCTTGGAAATTTGACATATAAGCTAAATCAGCTCAAG
AAGCAAGTTCAAGCGGAGAGAGTTGTTTCAGTAAAAGATAAAATTGAGAAGAATAGAAAG
AAAATTGAAAATGATATTTCTCAGCTTTTGTCTACAACATCAAGAAAGAGTGTTATATTT
GCGATGGATAATGGATTTGGTAACATGCCTCTCTGCAAATACAGTGGATTTCCTCAAGGA
CTGGGAGATAGAGACTATGTCAACAGTCATGAGGTTGTGCTCTCAACAAGTAGCAAGCTT
TCACATGTTCAGAAGATACCGCCGTATACCACTTGGATCTTCTTGGACAAAAATCAGAGA
ATGGCTGAAGACCAGTCAGTGGTTGGGAGAAGACGTATATATTATGATCAACATGGAAGC
GAAGCACTAGTCTGCAGTGACAGTGAGGAAGACATTATAGAACCTGAGGAGGAGAAACAT
GAATTCTCTGATGGTGAAGATCGTATTCTATGGACGGTATTTGAGGAGCATGGGCTAGGT
GAGGAAGTAATAAATGCTGTGAGCCAGTTCATTGGAATAGCCACCTCGGAAGTACAGGAT
AGATACAGCACACTAAAGGAGAAATATGATGGAAAAAACTTGAAGGAATTTGAGGATGCC
GGACATGAAAGGGGGATTGCTCTGGAGAAGAGCCTAAGTGCTGCTTTGGATTCTTTTGAT
AACCTCTTTTGTCGCCGTTGCTTGTTATTTGACTGCCGTCTGCATGGATGTTCCCAAACT
TTGATTAATCCTAGTGAGAAGCAACCTTATTGGTCTGAATATGAAGATGATAGGAAACCT
TGCAGCAATCATTGTTACCTTCAGTCAAGAGCTGTTCAGGATACAGTAGAGGGGTCAGCT
GGTAATATCTCTAGTATAATAACAAATACAGAAGGGACTTTACTGCACTGCAATGCTGAA
GTGCCAGGTGCTCATAGTGACATCATGGCAGGTGAAAGATGCAATTCCAAAAGGGTGTTA
CCTGTTACATCAGAAGCTGTGGACAGCTCAGAAGTTGCTATTGGTAATGAAAATACAGAT
ACTTCAATGCAAAGTTTGGGAAAGCGCAAAGCTTTAGAGCTAAATGACTCAGTAAAAGTT
TTCGATGAAATTGAGGAATCTTTAAATAAGAAACAAAAGAAACTGTTGCCTTTGGATGTA
CTTACAGCATCAAGTGATGGTATACCACGTCCAGACACCAAAAGTGGGCACCATGTTGGT
GCAATCAATGACAATGAACTTCAAATGACCTCCAAAAATACAATAAAGAAATCTGTTAGT
GCTAAAGTTGTTTCCCATAATAATATTGAGCACAATATAATGGATGGAGCCAAAGATGTC
AATAAAGAGCCTGAGATGAAGCAGTCATTTTCCAAAGGAGAACTGCCTGAAGGAGTCTTG
TGCAGCTCTGAGTGGAAACCTATTGAGAAAGAACTATACTTGAAAGGAGTGGAGATATTT
GGGAGAAACAGTTGCCTTATAGCCAGAAATTTACTTTCTGGTCTGAAGACTTGCATGGAA
GTTTCTACTTACATGCGTGACAGTAGTTCTTCAATGCCCCATAAATCTGTTGCACCAAGC
TCCTTTTTGGAAGAAACTGTGAAAGTTGATACAGATTATGCAGAGCAAGAGATGCCTGCA
AGACCACGGTTGCTTCGTAGAAGAGGAAGAGCACGGAAACTTAAATATTCTTGGAAGTCC
GCTGGCCATCCATCAATTTGGAAAAGAATTGCAGATGGTAAAAATCAATCTTGTAAGCAG
TATACCCCATGTGGGTGCCAGTCTATGTGTGGAAAGCAGTGCCCTTGTCTGCATAATGGA
ACATGCTGTGAAAAATACTGCGGGTGCTCGAAGAGTTGCAAAAACCGGTTCAGGGGATGC
CACTGTGCAAAGAGTCAATGTCGAAGCAGGCAATGTCCATGCTTTGCTGCTGGACGTGAA
TGTGACCCAGATGTTTGCCGGAATTGCTGGGTTAGTTGTGGGGATGGTTCATTGGGTGAG
CCACCCAAACGAGGAGATGGTCAATGTGGTAACATGAGGCTGCTTCTAAGGCAGCAACAG
AGGATACTCTTGGCAAAGTCTGATGTTGCTGGATGGGGAGCCTTTTTAAAGGTAGGGTAA
CGAATCGTCTCATGTTTCTCTGCAATTACTTGTTAGTGCCGGTACTGAACTTGATGATGT
GATTTCAGAATTCTGTCAGCAAGAATGATTATCTTGGAGAATATACTGGGGAATTGATTT
CCCACCGAGAAGCAGACAAGCGTGGGAAAATTTATGATCGTGCAAATTCGTCTTTTCTAT
TTGACTTGAATGATCAGTATGTCCTTGATGCTTATCGCAAAGGAGACAAGCTGAAATTTG
CAAACCACTCTTCAAATCCTAACTGTTTTGCCAAGGTAATGCTGGTAGCTGGAGATCATC
GGGTGGGAATATTTGCCAAGGAGCACATTGAAGCTAGTGAGGAGCTTTTTTATGACTACC
GTTACGGACCAGACCAAGCACCAGCATGGGCTCGGAAACCTGAGGGTTCCAAGAGAGAAG
ATTCATCAGTGTCTCAAGGCAGAGCTAAGAAACATCAATCTCATTGACGTACAGACTACA
TGGTTTTTCAAATACATCTGGGTCATTTTCCAACAAAATCAGCAGTGTTTTTGTCCATAT
AACCTATTAAAGGAAAGGAAGCATGTATATGTCAGCATCATTTATCTCTGTATATATGTG
CCCGAGTGTGCCTTCAGAGGTTTTGAAGCTCTAGCAATTATAAGATAAAGATTGGGCAAT
AAGGTCGAAACATTATTATAGTTTGACAATAAGCTAAAAATTTTTCCAGCAAGCCTCTAC
AACTGGGTAGGCGACGAATAAAGTTGGGCAATATCGTTGTGAGTGGCGTGTAGCATAATT
ACGGTTGATCCATTTATTTTAGGGAGAATGCTGCAATTCTGATTTATATTATCAGGCCGA
GACCTGTGGCTTCCCCGCATATGCCTTAAAGATTTGTTGTTTTCCAACAGTATTCAAGAA
ACATTTGTTGAGCTCATAAGTTCATATACATCGCCATTTTAGCGGTGAATTATCGTTGAG
TCT