Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t01588.4
CDS Infomation

gene=orange1.1t01588
Sequence

ATGTATGGGAATTTGCCTTCCGAAAGTCAGCTGACAGACTGGGAATTTGCTGTGTCTCAG
CATTCTGCCGTGCCACAGGGAATTTTGGATATTATCCAGGCAATGCCTCATGATGCACAC
CCTATGGGAGTGCTTGTCAGTGCTATGAGTGCTCTTTCTATCTTTCATCCTGATGCCAAC
CCTGCTCTCAAAGGCCAAGATATTTACAAGTCGAAACAAGTGAGGGACAAACAAATAGCA
CGTATTCTTGGCAAGGCACCAACCATTGCAGCGGCAGCTTATCTGAGGATGGCAGGGAGA
CCTCCAGTTCTACCTTCAAACAACCTTTCTTATTCAGAAAACTTCCTATACATGCTTGAT
TCACTAGGTAATAGGGCATATAAACCCAATCCCCGACTAGCTCGTGTGCTGGATGTTCTC
TTCATACTACATGCTGAACACGAAATGAATTGCTCCACATCTGCTGCCCGTCATCTTGCA
TCAAGTGGTGTTGATGTATATACCGCACTTGCTGGCGCTGTTGGAGCACTCTATGGTCCT
CTTCATGGTGGAGCCAATGAGGCTGTGCTTAAGATGCTGAATGAGATAGGTACAGTTGAG
AATATACCCGAGTTCATTGAAGGTGTGAAGAATAGAAAGAGGAAGATGTCAGGTTTTGGG
CACCGCGTATACAAAAACTATGATCCCAGAGCAAAGGTCATTAGGAAACTAGCAGAGGAA
GTATTTTCCATTGTTGGCCGGGATCCTCTTATTGAGGTTGCTGTTGCTTTGGAGAAGGCT
GCACTATCTGATGAGTATTTTGTTAAGAGGAAGCTATATCCAAATGTTGACTTCTACTCT
GGGTTGATATATAGGGCAATGGGATTTCCAACGGAGTTTTTCCCTGTTCTATTTGCCATC
CCACGCATGGCTGGGTACTTAGCACACTGGCGAGAGTCCTTGGATGATCCTGACACAAAG
ATAATGAGACCCCAACAGGTTTATACTGGTGTATGGATGCGACATTATATGCCACTCAAA
GAGCGGATGATAGAGAAGAATGCAGACAGGCTTGGACAGGTGTCTGTTTCAAATGCCACA
AGACGAAGACTCGCTGGATCAGGGAATTAA

Peptide Sequence

PEP ID

orange1.1t01588.4
PEP Infomation
Sequence

MYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDAN
PALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLD
SLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGP
LHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEE
VFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAI
PRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERMIEKNADRLGQVSVSNAT
RRRLAGSGN*

Transcript Sequence

Transcript ID

orange1.1t01588.4
Transcript Infomation

gene=orange1.1t01588 CDS=745-1854
Sequence

AATGAAAAAAAGCAAAGTTTTTTTGGTTATTAGTGTAAATTTCCCTATTTTTAAAGAGAG
GTAATTTGACCAGATTAGCTTAAAGCTCTCTCAATCAAACTTGAAGGCAAATTCATTTAT
TCAATTTGTATTGACTCATTCATCAACCGAATCAATTGGACTAGAGCTCGTTTTATCTAG
TTTTGCTTCAAAAACAATGGCGCCAAGCGTAGAATCATCGTCGGCCGTTACAGCTCGTGG
GCGGTTGGCCGTACTGACAGCTCATTTGGCATCAACCGAGTCAAATCAAGGCAGGCTCAT
CGAGCCATGGTGCACCTCTGCTCAGTCCATGGTACCACCTCCGGGAAATCTCAAGGGCAG
CTTGACCGTCGTCGACGAACGAACCGGCAAAAGATACCAGATACCTGTCTCTCAGGAAGG
CACCGTTAAAGCCACCGACTTCAAGAAGGTTGTAGTATTACTAATAAAATTCTTTTTTTT
TCTTTCTATAAGAATTTTCGATTTTCAATTAGTATATTTATAATTATCGCTTTGTTTGTG
AATTTGGTGGATTTACATTTACAGATAACAACAGGAAAGAACGACAAGGGTTTGAAACTG
TATGATCCGGGGTACTTGAACACGGCGCCTGTGAGATCATCAATTTGTTATATTGATGGA
GATGAGGGTATCCTTAGATACAGAGGCTACCCTATTGAGGAATTGGCAGAGTCCAGTTCT
TTCTTGGAAGTCGCTTATCTTTTGATGTATGGGAATTTGCCTTCCGAAAGTCAGCTGACA
GACTGGGAATTTGCTGTGTCTCAGCATTCTGCCGTGCCACAGGGAATTTTGGATATTATC
CAGGCAATGCCTCATGATGCACACCCTATGGGAGTGCTTGTCAGTGCTATGAGTGCTCTT
TCTATCTTTCATCCTGATGCCAACCCTGCTCTCAAAGGCCAAGATATTTACAAGTCGAAA
CAAGTGAGGGACAAACAAATAGCACGTATTCTTGGCAAGGCACCAACCATTGCAGCGGCA
GCTTATCTGAGGATGGCAGGGAGACCTCCAGTTCTACCTTCAAACAACCTTTCTTATTCA
GAAAACTTCCTATACATGCTTGATTCACTAGGTAATAGGGCATATAAACCCAATCCCCGA
CTAGCTCGTGTGCTGGATGTTCTCTTCATACTACATGCTGAACACGAAATGAATTGCTCC
ACATCTGCTGCCCGTCATCTTGCATCAAGTGGTGTTGATGTATATACCGCACTTGCTGGC
GCTGTTGGAGCACTCTATGGTCCTCTTCATGGTGGAGCCAATGAGGCTGTGCTTAAGATG
CTGAATGAGATAGGTACAGTTGAGAATATACCCGAGTTCATTGAAGGTGTGAAGAATAGA
AAGAGGAAGATGTCAGGTTTTGGGCACCGCGTATACAAAAACTATGATCCCAGAGCAAAG
GTCATTAGGAAACTAGCAGAGGAAGTATTTTCCATTGTTGGCCGGGATCCTCTTATTGAG
GTTGCTGTTGCTTTGGAGAAGGCTGCACTATCTGATGAGTATTTTGTTAAGAGGAAGCTA
TATCCAAATGTTGACTTCTACTCTGGGTTGATATATAGGGCAATGGGATTTCCAACGGAG
TTTTTCCCTGTTCTATTTGCCATCCCACGCATGGCTGGGTACTTAGCACACTGGCGAGAG
TCCTTGGATGATCCTGACACAAAGATAATGAGACCCCAACAGGTTTATACTGGTGTATGG
ATGCGACATTATATGCCACTCAAAGAGCGGATGATAGAGAAGAATGCAGACAGGCTTGGA
CAGGTGTCTGTTTCAAATGCCACAAGACGAAGACTCGCTGGATCAGGGAATTAAATGTTT
TTGGCTTCATGAATAAATATTCAGAGAAGAAAAATAAATGACATGAATATTATAAAGAAA
AATAATAATTACAGGCCTCTGGTTTTCTGTTTGAATATCTTCTACAGAAGTAGCAGGTTC
ATATGTTTTTTGGTTCCTTGTACTGGTAACATAAACACACACGCACACTGTGTATTAGGG
GAAACTGTCGTGTGATTCTATATTTGGAATTTCCAGAGCTGCTCTTACTCGATCATGCAG
TAGATATTTCTTTCCCTGCGTGGTATTGTTCCACTCTCTCTCTCTTTAACTTTTAGATTT
TTAGTTTTCTTTTCATTCATTTACTTTCTTGTTTTTACTTCTTAGCCATCAAATTGTACA
ACTTTTAATACACAACAAAATATAACATGAAGCTTTTAGT