Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00564.2
CDS Infomation

gene=orange1.1t00564
Sequence

ATGTCTCAACAAAGGCCATTACAGATGGTGGGTGGTAACCATCCTGGAGATTACAATGAC
ACAACTTTCACAAAAATTTTTGTCGGAGGGTTGGCTTGGGAGACTCAGAGAGATACCATG
AGACGTTATTTTGAGCAATTTGGTGAGATCCTTGAGGCTGTTGTTATCACGGACAAGAAC
ACAGGGAGATCCAAGGGTTATGGCTTTGTCACGTTCAAGGATCCTGAAGCAGCCATGCGA
GCATGTCAAAACCCATCTCCGGTGATTGATGGAAGAAGAGCTAACTGCAATCTTGCATCT
CTTGGTGCACACAAGACTCGTCCGCCAACTCCTCAACATGGTGGAGGACGGTTTAGACCA
GCACCAGGATTGGTGGCTCCGCCTGCTTATCATGGTGGCTTCTCATCATCTTATGTCCAT
CAACCCACCGGCCAATACACATTTCCTTATTCAGCTTATGGGTACACTGGATATTCCCAA
GACACAATGTATGCTTTGAACTATTACAATATTTATGGAGGTCAACAATTCTCACCTTAC
TATGGAACTGGGTCATCAGGGTCACCTGGAATGTTTCACAATTTCTATCCATTTTATGCT
CAATATGCACAGAGCAGTCAAGCTCAAGGGTTTGGGGTTCATTATCCCCAAATGCTACAA
TATGGCCCTTTCTTGCCTCACCATTATGGCACTGCCGGAATCTTGTCACTTCCAACTTCT
ATGCCCGCCACAACTTCTTCAACAGGTCATACTTCAATAATTTCTACACATTTATAA

Peptide Sequence

PEP ID

orange1.1t00564.2
PEP Infomation
Sequence

MSQQRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN
TGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRP
APGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQFSPY
YGTGSSGSPGMFHNFYPFYAQYAQSSQAQGFGVHYPQMLQYGPFLPHHYGTAGILSLPTS
MPATTSSTGHTSIISTHL*

Transcript Sequence

Transcript ID

orange1.1t00564.2
Transcript Infomation

gene=orange1.1t00564 CDS=627-1403
Sequence

GTCGTGTGTGTGCCCACTAGCAGCTTTTGTGTCTTCTCCTTTTCCAATTCCAATTCCCCA
CCCCTACCCTTCCCTAGTCCTAGCAAGCCCTTCTCCTTCTTCTTCCTAATAAATATATTT
TTAATCATCTCTTTTCCATTTATTAATATGTATTTATTATTTTCTCGACGGTTTTCTTTT
CTTTTTCTTTTTCTTTCCCACCACCCTCAACAGTAATGATTTTCTCGTTACGGGTATCGT
TGTTGTGGAATCTGAGGAGTTTTGGCTGTGAAAAAGTGACAGTTATCCCATTACAAAAAC
AAGATCACCAAAAAAACAAACACAAGTGCACGGGCGTTGCGTTTAGAAACCAAAAAAAAA
AAAAAAGGTTCTTTTTGATTGATTGATTGATGTGATCATCAAACAAACAAAACAAAACGG
TTCTTTTAGCCAATTTTCCTGTCCTATATTTTTATCTCTATATTTAGGCTTCTGTCTTCT
GGGGAGCTATTGTTTTTGTTCTGGTTATTTTTCCCTTTCTTTTGTCATTCTTAGTTTTTT
CTTGTTTCTTTTTTTCTCTTGTTGGGGTTGTTTTTTTTTTTTTTTTGGTTATTTGTTTGT
ATATTAATAATTATTAACTGAAAACCATGTCTCAACAAAGGCCATTACAGATGGTGGGTG
GTAACCATCCTGGAGATTACAATGACACAACTTTCACAAAAATTTTTGTCGGAGGGTTGG
CTTGGGAGACTCAGAGAGATACCATGAGACGTTATTTTGAGCAATTTGGTGAGATCCTTG
AGGCTGTTGTTATCACGGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACGT
TCAAGGATCCTGAAGCAGCCATGCGAGCATGTCAAAACCCATCTCCGGTGATTGATGGAA
GAAGAGCTAACTGCAATCTTGCATCTCTTGGTGCACACAAGACTCGTCCGCCAACTCCTC
AACATGGTGGAGGACGGTTTAGACCAGCACCAGGATTGGTGGCTCCGCCTGCTTATCATG
GTGGCTTCTCATCATCTTATGTCCATCAACCCACCGGCCAATACACATTTCCTTATTCAG
CTTATGGGTACACTGGATATTCCCAAGACACAATGTATGCTTTGAACTATTACAATATTT
ATGGAGGTCAACAATTCTCACCTTACTATGGAACTGGGTCATCAGGGTCACCTGGAATGT
TTCACAATTTCTATCCATTTTATGCTCAATATGCACAGAGCAGTCAAGCTCAAGGGTTTG
GGGTTCATTATCCCCAAATGCTACAATATGGCCCTTTCTTGCCTCACCATTATGGCACTG
CCGGAATCTTGTCACTTCCAACTTCTATGCCCGCCACAACTTCTTCAACAGGTCATACTT
CAATAATTTCTACACATTTATAAAATTAGAAAATTCGTATATGTGTTATGTATCTCCAAA
TCCAATTTATTTATTAAAGCAGGTGTAACGACGACAACAATAGGGGTGACTGGAACGGGA
ACTAGTGCTCTGCAAGCCTCGGCAACGGCTTCCGAACAAAATTCATCAACATAGTTGACT
TCAAGAAGTATAACGTCTTCCTTACAACATTAACAAGATCCAGAAAATGGCGAAAAGGGT
CGAGCAAAAGGGACAAAAAAACGAATAAGAAGAATCATTTTACAGTCATCAATGATTCAG
GGAAAAAAAAAGATTCCTCATTAGATAGCATAACAAGAGAAGGAATCCAAGAATTCAGCA
TCAAAATTATCATTTCAAGGAACGAGCAGCATTTGAGAGATAAAGCTCGGTCTACTAACT
TTCTTCAATTCATTCATGCTCAAAATTATTTTTCTTTATCAACATCGTTGTCATACTCAT
CATACATGCTTGCTTTAATTAAGGACATAAGGGAGTCTTAAGTAGTTGTTAGAATTAGAG
AACCGTGGGGAAAAAATCAAATTCATTTGTGTATTTGTGTTATAAGGTAGAAGCTAAATA
TTGGCTTTGGATTCTACCTAGGATCCTAATTGACAGTCGATTATGCCTCGAATTCATACA
GCATCCGAAGACATAACTCTTTGTCTATATTTGGAAGTAAATTGGTTCAAAAGATTGATT
TTGTATCTTTGAACCAAGACTGATTGGTCAGGAAAAGGCGAGCCTGGATGGCTTGACCCA
TTAACTTGTAATCTCTTTCTTCATTTTTCATGATTGATACTTTTTTAAGATAGGATTAGT
TGGAAAAACGGAAGATGTATGGATGTCTTTTTTCGCGGATAATCATCTCCTTTACCTTTC