Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00555.2
CDS Infomation

gene=orange1.1t00555
Sequence

ATGAGCGTGAAAGTACCGGCATCGAGGACACGTGTAGGGAAGTACGAGTTGGGAAGAACC
CTTGGTGAGGGTAGCTTTGCCAAGGTCAAGTTTGCAAAGAATGTTGAGACCGGAGATTTC
GTGGCCATTAAAATTGTTGATCGTGATCAAGTCCTTCGTCACAAGATGGTCGAACAGATA
AAACGTGAAATATCAACAATGAAGCTTATCAAACATCCGAATGTCATTAAAATTATTGAG
GTCATGGCTAGCAAAACAAAGATATACATTGTTCTCGAATTCATTGACGGCGGCGAGCTC
TTCGATAAAATTGCGAAGCATGGAAGATTGAAAGAGGATGAAGCCAGAAGATATTTCCAG
CAGCTCATTAATGCAGTGGACTATTGTCATAGCAGAGGGGTGTTCCATAGAGATTTGAAG
CCAGAGAATCTTCTCCTAGACTCGTATGGTGTTCTTAAAATTTCAGATTTTGGTTTGAGT
GCAATTTCTCAACAAGTACGGGAGGATGGGCTGCTTCACACTGCTTGTGGTACACCAAAT
TATGTTGCTCCTGAGGTGCTCAATGACAAGGGATACGACGGTAGAGCATCTGATGTTTGG
TCCTGCGGGGTTATTCTCTTTGTACTTATGGCTGGGTTCTTGCCTTTTGATGAGTCGAAT
CTTATGGCTTTGTATAGAAAAGTAAGTACATTCCATTTCCTTTCTGTGTATGGTGAGAGT
TACAAAAAATGCACTAACAAATATTCGTATACTTTGCAGATTTGCAGGGCTGATTTCTCT
TGTCCGTCATGGTTTTCATCTGGTGCCAAGAAACTAATCAAGCGTATTCTTGATCCAAAC
CCTGATACACGAATGACTATTTCTCAAATGTTAGAGGATGAATGGTTCAAGAAAGGGTAC
AAACCACCACATTTTGATAAGGAAGAGGAAGTGAATCTCGATGATGTTGATGCTATCTTC
AATGACTCGAAGGAAAATCTTGTAACTGAGAAGAAAGAGAAGCCTGTATCAATGAATGCT
TTCGAGCTAATCTCTAGGACCAAGAGTTTCAGCCTTGAAAATTTGTTTGAGAAACAAACG
GGCCTTGTGAAGCGAGAAACTCGTTTTACTTCCCAACGCCCTCCAAATGAAATCATGTCT
AAAATTGAGGAAGCTGCAAAGCCTCTTGGATTTAATGTTCGCAAGGGAAACTACAAGATG
AAGTTACAAGGTGATAAAACTGGAAGGAAAGGCCAGCTCTCTGTAGCTACTGAGGTGTTT
GAGGTGGCTCCCACTTTGCACATTGTGGAGGTTCGCAAAACTGGTGGCGACACGCTAGAG
TTTCACAAGTTCTACAAAAAATTTTCATCGGGACTGAAAGATGTTGTCTGGCAAGCGGAA
GAAAATAAAGAAGAATTAAGGGCGTGA

Peptide Sequence

PEP ID

orange1.1t00555.2
PEP Infomation
Sequence

MSVKVPASRTRVGKYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQI
KREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQ
QLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLSAISQQVREDGLLHTACGTPN
YVAPEVLNDKGYDGRASDVWSCGVILFVLMAGFLPFDESNLMALYRKVSTFHFLSVYGES
YKKCTNKYSYTLQICRADFSCPSWFSSGAKKLIKRILDPNPDTRMTISQMLEDEWFKKGY
KPPHFDKEEEVNLDDVDAIFNDSKENLVTEKKEKPVSMNAFELISRTKSFSLENLFEKQT
GLVKRETRFTSQRPPNEIMSKIEEAAKPLGFNVRKGNYKMKLQGDKTGRKGQLSVATEVF
EVAPTLHIVEVRKTGGDTLEFHKFYKKFSSGLKDVVWQAEENKEELRA*

Transcript Sequence

Transcript ID

orange1.1t00555.2
Transcript Infomation

gene=orange1.1t00555 CDS=199-1605
Sequence

TTTAAATGTTCATTCTATACAAGACGTGAGGAGCCAAGCAACTGGACCTCCTTCAAATCT
TCGTTCAAACCAACATTTTCAGGCAACAGAGGAATAAAGCCAATCTCCTTCGTGTATCCA
TAACTATATATATACGCGCGCGTGCACAGCGGTGGTGTGGAATTGACCGCTATATATCGG
ACGGCGGAGGTTGAGAAAATGAGCGTGAAAGTACCGGCATCGAGGACACGTGTAGGGAAG
TACGAGTTGGGAAGAACCCTTGGTGAGGGTAGCTTTGCCAAGGTCAAGTTTGCAAAGAAT
GTTGAGACCGGAGATTTCGTGGCCATTAAAATTGTTGATCGTGATCAAGTCCTTCGTCAC
AAGATGGTCGAACAGATAAAACGTGAAATATCAACAATGAAGCTTATCAAACATCCGAAT
GTCATTAAAATTATTGAGGTCATGGCTAGCAAAACAAAGATATACATTGTTCTCGAATTC
ATTGACGGCGGCGAGCTCTTCGATAAAATTGCGAAGCATGGAAGATTGAAAGAGGATGAA
GCCAGAAGATATTTCCAGCAGCTCATTAATGCAGTGGACTATTGTCATAGCAGAGGGGTG
TTCCATAGAGATTTGAAGCCAGAGAATCTTCTCCTAGACTCGTATGGTGTTCTTAAAATT
TCAGATTTTGGTTTGAGTGCAATTTCTCAACAAGTACGGGAGGATGGGCTGCTTCACACT
GCTTGTGGTACACCAAATTATGTTGCTCCTGAGGTGCTCAATGACAAGGGATACGACGGT
AGAGCATCTGATGTTTGGTCCTGCGGGGTTATTCTCTTTGTACTTATGGCTGGGTTCTTG
CCTTTTGATGAGTCGAATCTTATGGCTTTGTATAGAAAAGTAAGTACATTCCATTTCCTT
TCTGTGTATGGTGAGAGTTACAAAAAATGCACTAACAAATATTCGTATACTTTGCAGATT
TGCAGGGCTGATTTCTCTTGTCCGTCATGGTTTTCATCTGGTGCCAAGAAACTAATCAAG
CGTATTCTTGATCCAAACCCTGATACACGAATGACTATTTCTCAAATGTTAGAGGATGAA
TGGTTCAAGAAAGGGTACAAACCACCACATTTTGATAAGGAAGAGGAAGTGAATCTCGAT
GATGTTGATGCTATCTTCAATGACTCGAAGGAAAATCTTGTAACTGAGAAGAAAGAGAAG
CCTGTATCAATGAATGCTTTCGAGCTAATCTCTAGGACCAAGAGTTTCAGCCTTGAAAAT
TTGTTTGAGAAACAAACGGGCCTTGTGAAGCGAGAAACTCGTTTTACTTCCCAACGCCCT
CCAAATGAAATCATGTCTAAAATTGAGGAAGCTGCAAAGCCTCTTGGATTTAATGTTCGC
AAGGGAAACTACAAGATGAAGTTACAAGGTGATAAAACTGGAAGGAAAGGCCAGCTCTCT
GTAGCTACTGAGGTGTTTGAGGTGGCTCCCACTTTGCACATTGTGGAGGTTCGCAAAACT
GGTGGCGACACGCTAGAGTTTCACAAGTTCTACAAAAAATTTTCATCGGGACTGAAAGAT
GTTGTCTGGCAAGCGGAAGAAAATAAAGAAGAATTAAGGGCGTGACAACAACTGCAGATG
GGTCAATTATTAGTTAATTCTTCTAATTTGTTTTGGTTTCTGTAAGTGAATGCGTACAAA
CACATTTTCAAGAAATAGGAAATGAATGTTATTCGCTGGCGAAATGAAGTGGACATGAAC
TAAAAGCCCCACTCAAAAGAGTAGGTCTTGGTTCTGTTTTCTGGGCCCTCTTTCCCCTCA
ATTTCGCATCATTTTTTGTTTTCCAACTGTATTTCATTTTCTTTTTTCTTTACAAAAGTC
GTTAAAAAGTTTCAATAAATGGAGGTAACAAGGTGGCGGCATCATATTTGCTGCGCGCGT
GTGAAATTTTTAGATTAGAATTGGGATTAGGATTAGGAGTATATCTTAGGTTTCATTTTT
TGCTTTCTGTTTTATTAAACCAAAACTTCAAAAATTCGATGCGTGAGAAAGGGGAAAAAA
ATGTAAAAAATATTTG