Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00518.1
CDS Infomation

gene=orange1.1t00518
Sequence

ATGGCTAGCTTCACCACTTCATTGATGCTATGGCTATGCTTGTTATTCTGTGTTCACACT
GTTCATGTTATGGCAACGTGGCCTCGAGGGAGATCAACGAGGTTTTACGAATTCAAGATA
CAAGCCACGAGAGTTAACAAACTGTGTAACGCCAAAGACATCGTCACAGTCAACAACATG
TTTCCAGGCCCCGTCGTTTACGCCCAAGAAGACGATAGAATCATTGTCAAAGTCACCAAT
CAATCCCCCTACAATGCGACAATTCACTGGCATGGCGTGAGGCAGAGACTATCGTGCTGG
TTTGATGGTCCAGCTTATATCACCCAGTGTCCAATTCAATCTGGACAAACTTTCACGTAC
GAGTTCACAATGTTTCAGCAAAAGGGCACCTTTTTCTGGCATGCTCACGTTTCTTGGCTT
AGAGGCACCGTTTACGGTGCCATTGTTGTGTATCCCAAGACCGGAGTCCCTTACCCTTTT
CAATTTCCCTATCAAGAGCATATCATTATACTAGGGGAATATTGGCTGCAAGACGTGGTG
CAACTTGAACGACAAGTTCTAGCTAGCGGAGGTGCTCCTCCTCCATCTAACGCTTATACG
ATCAACGGTCACCCAGGGCCCAACTACAACTGCTCCGCCAACGATGTGTATAAGATTGAA
GTGGTTCCGGGGAAGACGTATCTATTAAGGCTAATAAACGCAGGCTTAAACATGGAGAAC
TTCTTTGCCATTGCAAATCACAAATTAACAATCGTTGAAGCTGATGCCGAGTACACAAAG
CCATTCAGTACAGACCGTGTGATGCTTGGACCAGGGCAGACCGTGAACGTCCTTGTCACG
GCGGATCAGCCAATTGGAAAATATTCAATGGCCATGGGACCTTACATGTCAGCACAAGGG
GTTTCATTTCAAAACATATCAGCAATTGCTTACTTCCAATACTTGGGTGCCCAGCCTAAC
AGCCTCGCCTTACCCGCTACATTACCTAGATTTAATGATAATCTTGCTGTTAAAACTGTC
ATGGATGGATTAAGAAGCCTAAATCCCGTACCAGTTCCGAAAGAAATCGACGCTAATCTT
TTCGTCACTATTGGATTAAATGTCCAAAAGTGCCGGTCTGGGAACCCTCAACAAAATTGC
CGAGGGCTAAATAACGGGGTTATGGCTGCTTCTATGAACAATATTAGTTTTATTAAGCCT
AATGTTTCAGTCTTAGAAGCTTATTATAAGAAGATTGATGGTATTTTCACTGAAGACTTT
CCTGAAGCACCCTTGAAATTCTATGACTTTGTCAATGGGGCACCCAATAATATCCCTAAT
GACACAAATTCCATGAATGGGACTAGGACCAAGGTCCTTGAATTTGGAACCAGGGTGCAA
ATTATTTTGCAAGACACTGCAACCGTCACCACTGAAAATCACCCAATTCATCTCCACGGC
TATAACTTCTATGTTGTCGGGTACGGTACCGGAAACTATGACCCTCAAACGGCGAATTTC
AATTTGATTGATCCTCCTTATATGAACACAATCGGTGTCCCGGTGGGCGGATGGGCTGCA
ATTCGATTCACTGCTGACAATCCAGGGGTTTGGTTTATGCATTGTCACTTTGATATACAC
CAGTCATGGGGATTAGGTACGGTGCTGATAGTGAAAAATGGAAAAGGAGAGCTAGAGACA
CTTCCACATCCACCAGCAGACTTTCCCCGTTGTTGA

Peptide Sequence

PEP ID

orange1.1t00518.1
PEP Infomation
Sequence

MASFTTSLMLWLCLLFCVHTVHVMATWPRGRSTRFYEFKIQATRVNKLCNAKDIVTVNNM
FPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTY
EFTMFQQKGTFFWHAHVSWLRGTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVV
QLERQVLASGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMEN
FFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQG
VSFQNISAIAYFQYLGAQPNSLALPATLPRFNDNLAVKTVMDGLRSLNPVPVPKEIDANL
FVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDF
PEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHG
YNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIH
QSWGLGTVLIVKNGKGELETLPHPPADFPRC*

Transcript Sequence

Transcript ID

orange1.1t00518.1
Transcript Infomation

gene=orange1.1t00518 CDS=1-1716
Sequence

ATGGCTAGCTTCACCACTTCATTGATGCTATGGCTATGCTTGTTATTCTGTGTTCACACT
GTTCATGTTATGGCAACGTGGCCTCGAGGGAGATCAACGAGGTTTTACGAATTCAAGATA
CAAGCCACGAGAGTTAACAAACTGTGTAACGCCAAAGACATCGTCACAGTCAACAACATG
TTTCCAGGCCCCGTCGTTTACGCCCAAGAAGACGATAGAATCATTGTCAAAGTCACCAAT
CAATCCCCCTACAATGCGACAATTCACTGGCATGGCGTGAGGCAGAGACTATCGTGCTGG
TTTGATGGTCCAGCTTATATCACCCAGTGTCCAATTCAATCTGGACAAACTTTCACGTAC
GAGTTCACAATGTTTCAGCAAAAGGGCACCTTTTTCTGGCATGCTCACGTTTCTTGGCTT
AGAGGCACCGTTTACGGTGCCATTGTTGTGTATCCCAAGACCGGAGTCCCTTACCCTTTT
CAATTTCCCTATCAAGAGCATATCATTATACTAGGGGAATATTGGCTGCAAGACGTGGTG
CAACTTGAACGACAAGTTCTAGCTAGCGGAGGTGCTCCTCCTCCATCTAACGCTTATACG
ATCAACGGTCACCCAGGGCCCAACTACAACTGCTCCGCCAACGATGTGTATAAGATTGAA
GTGGTTCCGGGGAAGACGTATCTATTAAGGCTAATAAACGCAGGCTTAAACATGGAGAAC
TTCTTTGCCATTGCAAATCACAAATTAACAATCGTTGAAGCTGATGCCGAGTACACAAAG
CCATTCAGTACAGACCGTGTGATGCTTGGACCAGGGCAGACCGTGAACGTCCTTGTCACG
GCGGATCAGCCAATTGGAAAATATTCAATGGCCATGGGACCTTACATGTCAGCACAAGGG
GTTTCATTTCAAAACATATCAGCAATTGCTTACTTCCAATACTTGGGTGCCCAGCCTAAC
AGCCTCGCCTTACCCGCTACATTACCTAGATTTAATGATAATCTTGCTGTTAAAACTGTC
ATGGATGGATTAAGAAGCCTAAATCCCGTACCAGTTCCGAAAGAAATCGACGCTAATCTT
TTCGTCACTATTGGATTAAATGTCCAAAAGTGCCGGTCTGGGAACCCTCAACAAAATTGC
CGAGGGCTAAATAACGGGGTTATGGCTGCTTCTATGAACAATATTAGTTTTATTAAGCCT
AATGTTTCAGTCTTAGAAGCTTATTATAAGAAGATTGATGGTATTTTCACTGAAGACTTT
CCTGAAGCACCCTTGAAATTCTATGACTTTGTCAATGGGGCACCCAATAATATCCCTAAT
GACACAAATTCCATGAATGGGACTAGGACCAAGGTCCTTGAATTTGGAACCAGGGTGCAA
ATTATTTTGCAAGACACTGCAACCGTCACCACTGAAAATCACCCAATTCATCTCCACGGC
TATAACTTCTATGTTGTCGGGTACGGTACCGGAAACTATGACCCTCAAACGGCGAATTTC
AATTTGATTGATCCTCCTTATATGAACACAATCGGTGTCCCGGTGGGCGGATGGGCTGCA
ATTCGATTCACTGCTGACAATCCAGGGGTTTGGTTTATGCATTGTCACTTTGATATACAC
CAGTCATGGGGATTAGGTACGGTGCTGATAGTGAAAAATGGAAAAGGAGAGCTAGAGACA
CTTCCACATCCACCAGCAGACTTTCCCCGTTGTTGA