Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00505.1
CDS Infomation

gene=orange1.1t00505
Sequence

ATGGAAACAGTAAATGAAGGAAGAATCCGACAAACAGTGATGGAAGTACTGAAAAATTCC
GACATGGAGGAGATGACTGAGTTCAAAGTCCGTGTTGAGGCCTCTGAGCGACTGGGAATA
GACCTCTCTGACGCCAATCACAAGAGGTTTATCAGAGGAGTTGTTGAGTCGTTTTTGCTC
TCCACCACCGAAAGCACAGACAATCGTATAGAACCGGATTTGGAAGTTGAAGAGCAACGA
GCCCAGATCGGGAAACGCATTAACGATGACGGCGATTCGATTATTTGCAAGCTCTCAAAC
AAGAGGACCGTTGCAATTCAAGAATTCAAAGGGAGAGCTTTTGTATCAATTAGGGAATAT
TTTCGAAGAGACGGAAAGCTGGTTCCTACAGCTAAAGGAATTGCGTTGACTAGTGAACAA
TGGAGAGCCTTCAGTAAAAGTCTCCCTGCAATAGATGAAGCTGTTGTGAAGATGCAATCT
AAGTTAAGATCTGAATCCAGTGGTGAACAAAACAAAGATGTGGCAAATTCAATGACTTCA
CCTCTTGAACTTTTTCCCACTGAACTCCACCGTTTCAATGGGAAGAATTACCGGGTCTGG
GCGCAACAGATAGAACTTCTTTTAAAGCAATTAAAGGTTGCATATGTCCTCACTGACCCA
TGCCCTATTGTTACTCTATGCCCTCAAGCTAGCTCTGAAGAAGTAACAAGAGTCAAGGCT
GCTGAAAGAAAGTGGTTGAATGACAACAACATATGTCGCCACCACATTTTAAACTTTCTA
TCTGATCACCTTTATTATCAGTACTCAAAAAGAACCAGTAGTGCCAAAGAACTATGGGAA
GAGCTGAAATTAGTTTACCTTGATGAGGAATTTGGAACAAAGAGATCTCAAGTTAAGAAG
TACATTGAATTTCAGATGTTTGATGAGAAATCAGTCTTTGAGCAAGCTCTAGAACTGAAT
AAGATTGCTGATTCCATTGTTGCTGCTGGCATGATGATTTATGAGAATTTTCATGTTAGC
GTCATCCTTTCCAAGCTTCCCCTGTCTTGGAAGGACTTCTGCATTAAGTTGATGCGAATG
GAATACCTTACTTTCACAATGTTGATGGATCATATAAAGGCAGAGGAAGAATCTCGTAGC
CATAACAAGCAAGAAGAGCCTTCCAAGTTTGTAGAGTTATCTCCAGCTGTAAATTTTGGT
CCAAGGATGAGAGAGATGAGCAAGAAGAGGCGAGAATCAGAGATGGATAGCAAGACTGTA
GTCTGCTACAATTGTCGGAAGAAGGGGCATGTGGCCAAACATTGTCACAATAAGAGGCTA
CACCAGGAAATTAACGACAACTGCCCCTGCTGA

Peptide Sequence

PEP ID

orange1.1t00505.1
PEP Infomation
Sequence

METVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLL
STTESTDNRIEPDLEVEEQRAQIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREY
FRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQSKLRSESSGEQNKDVANSMTS
PLELFPTELHRFNGKNYRVWAQQIELLLKQLKVAYVLTDPCPIVTLCPQASSEEVTRVKA
AERKWLNDNNICRHHILNFLSDHLYYQYSKRTSSAKELWEELKLVYLDEEFGTKRSQVKK
YIEFQMFDEKSVFEQALELNKIADSIVAAGMMIYENFHVSVILSKLPLSWKDFCIKLMRM
EYLTFTMLMDHIKAEEESRSHNKQEEPSKFVELSPAVNFGPRMREMSKKRRESEMDSKTV
VCYNCRKKGHVAKHCHNKRLHQEINDNCPC*

Transcript Sequence

Transcript ID

orange1.1t00505.1
Transcript Infomation

gene=orange1.1t00505 CDS=299-1651
Sequence

AAAGCCTAACCAACAATCGGTTCCATGGTCTAGTGGTTAGGACATTGGACTCTGAATCCA
GTAACCCGAGTTCAAATCTCGGTGGAACCTTATTATTTTGCTTTTAGATGTTAATTACTC
TCAAAAGTCAAGACATTAATTGCATGGGGGTGATAAACCAGCCTAGCAAGTAAAATTGGG
GGGGATTCAAACCCCAGGCCTAGCTTTAATATTTTGCTTTTAGCTGCTAATTGCTTTCAA
AACATTAATTACAACTAGGAATTCTATTACTTTAGCTATTCGTTTCGCTTGCTGGAAGAT
GGAAACAGTAAATGAAGGAAGAATCCGACAAACAGTGATGGAAGTACTGAAAAATTCCGA
CATGGAGGAGATGACTGAGTTCAAAGTCCGTGTTGAGGCCTCTGAGCGACTGGGAATAGA
CCTCTCTGACGCCAATCACAAGAGGTTTATCAGAGGAGTTGTTGAGTCGTTTTTGCTCTC
CACCACCGAAAGCACAGACAATCGTATAGAACCGGATTTGGAAGTTGAAGAGCAACGAGC
CCAGATCGGGAAACGCATTAACGATGACGGCGATTCGATTATTTGCAAGCTCTCAAACAA
GAGGACCGTTGCAATTCAAGAATTCAAAGGGAGAGCTTTTGTATCAATTAGGGAATATTT
TCGAAGAGACGGAAAGCTGGTTCCTACAGCTAAAGGAATTGCGTTGACTAGTGAACAATG
GAGAGCCTTCAGTAAAAGTCTCCCTGCAATAGATGAAGCTGTTGTGAAGATGCAATCTAA
GTTAAGATCTGAATCCAGTGGTGAACAAAACAAAGATGTGGCAAATTCAATGACTTCACC
TCTTGAACTTTTTCCCACTGAACTCCACCGTTTCAATGGGAAGAATTACCGGGTCTGGGC
GCAACAGATAGAACTTCTTTTAAAGCAATTAAAGGTTGCATATGTCCTCACTGACCCATG
CCCTATTGTTACTCTATGCCCTCAAGCTAGCTCTGAAGAAGTAACAAGAGTCAAGGCTGC
TGAAAGAAAGTGGTTGAATGACAACAACATATGTCGCCACCACATTTTAAACTTTCTATC
TGATCACCTTTATTATCAGTACTCAAAAAGAACCAGTAGTGCCAAAGAACTATGGGAAGA
GCTGAAATTAGTTTACCTTGATGAGGAATTTGGAACAAAGAGATCTCAAGTTAAGAAGTA
CATTGAATTTCAGATGTTTGATGAGAAATCAGTCTTTGAGCAAGCTCTAGAACTGAATAA
GATTGCTGATTCCATTGTTGCTGCTGGCATGATGATTTATGAGAATTTTCATGTTAGCGT
CATCCTTTCCAAGCTTCCCCTGTCTTGGAAGGACTTCTGCATTAAGTTGATGCGAATGGA
ATACCTTACTTTCACAATGTTGATGGATCATATAAAGGCAGAGGAAGAATCTCGTAGCCA
TAACAAGCAAGAAGAGCCTTCCAAGTTTGTAGAGTTATCTCCAGCTGTAAATTTTGGTCC
AAGGATGAGAGAGATGAGCAAGAAGAGGCGAGAATCAGAGATGGATAGCAAGACTGTAGT
CTGCTACAATTGTCGGAAGAAGGGGCATGTGGCCAAACATTGTCACAATAAGAGGCTACA
CCAGGAAATTAACGACAACTGCCCCTGCTGATACAAAGGTTAACAAGTTTGATAAGAGTA
GGAGAATAGCTGATTTCCACTAACAGGTTAAAACCAACTCAGTGTAGCTGTTTGATTTCA
TTTAGAGTTGGGAGTACAAAGCTTTGCAGGATAATTTTCCACAGGAAGATTGCTGGACTG
CTGAGCCCTAGTTTTCAGTAAGTGTTCATCTTATGTAAATCCTGCAATGCTGCTTGTAAA
ATTTTCACCCAAGAACATGAATAGACTGTATAGCAGATTCCACTGCAATGGCCAAACCTA
TTTGTCTTGACAAGCTATCAGCCTTGGATGGTCTTTGTCAATTGTATTCGGCTTGGGTTT
GCATACTTTTGTTCTTTATCCAAGCTTTGATCATTCTTGCTAAGGATCTTGGTTTCTTGA
CTTTGTTCCCTGGCTGGCCTAACGTAGTCTTTTTTGTAAATTTTCATGATTTTTTTTTTT
TTTTTTGCCTGTTGATACCCTCGCTCGTCCTCAACTAGTCTGGCTAGAATTGAGTTCAAT
GAATATTTGATTAAGATGCAATGATGTAACCTTAATGATCATTTGTATCCGATTAATGGA
ATTAAGCC