Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00501.1
CDS Infomation

gene=orange1.1t00501
Sequence

ATGGAAGAGCAAGGAGGGAAGGTGAGGGCCTTGATAGACAAGGCGACGAACTCGACGGAA
CGAGAGGTGGACCCACGTCTCCTCAAGGCCATTAAATGGGTAGTTCGAAATTCGGATTCG
GAGCTGCGACTCGCCGCTCAAACCCTCATGGACCTTATGAAACGCGACCATTCTCAGGTC
CGATATCTCACACTTCTCATAATTGATGAACTCTTCATGCGATCAAAGCTTTTTAGGACC
ATTCTTGTTGAGAACATGGATCAGTTATTGAGTTTAAGTATTGGATTCAGAAGAAATTTA
CCACTTCCTGCGCCTCCAGCTATTGCATCTATTTTGCGATCAAAGGCTTTTGAATTTTTG
GAGAAATGGAATGCTTCTTTTGGGGTTCACTACAGACAAATTAGATTAGGCTTTGATTAC
CTTAAAAATACTCTCAGGCTCCAGTTTCCTAATTTACAAGCAAATGCAGCTCGGATTCAG
CGGGAGAGACGGGAAAGAGAGATGAGGACAAAAGAGATTTTACGAAACAAGTTTGAAATG
CTGCGGCAAAATCTTTCTTCGATAAAGGAAGAAATACAGTCGACAATAGATGAGATTGGA
GAGTGTTTAGACATCATTCGTGCCAAGGAAGAAATTATGCTGCTTGATCCCTTGGATGAT
GAAGATTTTGAGGAGTTCCATTCTTCTGAATTGAGGCAGATTCGCCTTGATTCATTGAAA
GAAGGGGAAAAGGTTCACGAGGATGAAGATAATAAAGTAGTTTTTGATGCACTGAGGGAG
TTGTACAAGCTTCTAGTGACAAAGCATTTGGTTTTGGTCCAAGAATGGATTTCTGTTCTT
ATTAGGGTGGAAGTGTCAGACAATAGGTCTAGAGATAAAATGCTGAAGGAGTTCATTGAT
ATTCAAAATCGCCTCCAATTGGTGAAGAAGAAATGTGAAGACTCTGGCTGTGGTCTTATA
AACAATGTGAAACCTCTCATAGAAGATGAATTAGAGGAAGATTTTTGGGAAGAGGGTAAG
ATTGGGTCTAGTGAGAGTGGGAGTTCGAATGCATCTAGTAAGCACAATAGTAATCTGTCC
ATGGTATTGGCCTCCAGTGAGGTCATAGGTAAGGCTTCTGAAGTCCCCAAACAGAAGTCT
GATGGGAATGATTCTCTGGATAATGAAGGTAGTAAAATTGATTCAACATTGCTCAGAAGT
AAGCTTCTGGCAGAAGCTCCAGTGATTGTATGTGGTTCTTTCTCAGATAATTTGAAAAGG
GATGTTTTGGTTAATCAAAGGGGCATGGAGTTTGACAATCACTGGGGTAGGGTAGACTAT
GATGCAGTTATTCCAGCGGAGAAGATAGCAGAATTGAACCTTAGGGCAACTCTTTACAAA
GAAGAGCAAGTAGAAATCCAACCATGCCGTGCTCCTTTGAGGAAAGGAGGCCTTTGTCAG
AGAAGGGATTTAGAAGTCTGCCCATTTCATGGACCCATCATTCCCCGAGATGACGAAGGA
AATCCTATCAATCAGAGCACATCATCGATAGAAAAGAGCTCTTTAACGGATGAGACTTTA
ACAGATTTGGGGTCTGATTTAGTGGAGCAATTAGCAAAACACGCTATAAAGAATGTAAGG
GAGAGAGATAAAGAGGAAGCTAGGAAGAGGAAAATTGATAAACAGTTGCTGAATCGAGCA
AAACTTGCAAAAGTACGGGAACACAATGAAGCAGTTTTACGGGATGCTGCCTTGGCTTCA
ACTTCAAGGTCTGCAACTGCAGGAGACGAGGCAGAAGATACAAATGGGAGGAGATCGTCA
TCAAGAAACAAGAAGCAAACTCTAGCTTCCATGCTGCGAAAGAAAGTAACTCCAAGAGAT
AGGTTAACTCGCAGACTTCTGAATACCCGAGCAAGGGATGCAACAATAAGACGGCTGAGA
ATGGGTGAGGATGCAATTTACAGAGAGTCCTTTCCAAATCAGTGGTAA

Peptide Sequence

PEP ID

orange1.1t00501.1
PEP Infomation
Sequence

MEEQGGKVRALIDKATNSTEREVDPRLLKAIKWVVRNSDSELRLAAQTLMDLMKRDHSQV
RYLTLLIIDELFMRSKLFRTILVENMDQLLSLSIGFRRNLPLPAPPAIASILRSKAFEFL
EKWNASFGVHYRQIRLGFDYLKNTLRLQFPNLQANAARIQRERREREMRTKEILRNKFEM
LRQNLSSIKEEIQSTIDEIGECLDIIRAKEEIMLLDPLDDEDFEEFHSSELRQIRLDSLK
EGEKVHEDEDNKVVFDALRELYKLLVTKHLVLVQEWISVLIRVEVSDNRSRDKMLKEFID
IQNRLQLVKKKCEDSGCGLINNVKPLIEDELEEDFWEEGKIGSSESGSSNASSKHNSNLS
MVLASSEVIGKASEVPKQKSDGNDSLDNEGSKIDSTLLRSKLLAEAPVIVCGSFSDNLKR
DVLVNQRGMEFDNHWGRVDYDAVIPAEKIAELNLRATLYKEEQVEIQPCRAPLRKGGLCQ
RRDLEVCPFHGPIIPRDDEGNPINQSTSSIEKSSLTDETLTDLGSDLVEQLAKHAIKNVR
ERDKEEARKRKIDKQLLNRAKLAKVREHNEAVLRDAALASTSRSATAGDEAEDTNGRRSS
SRNKKQTLASMLRKKVTPRDRLTRRLLNTRARDATIRRLRMGEDAIYRESFPNQW*

Transcript Sequence

Transcript ID

orange1.1t00501.1
Transcript Infomation

gene=orange1.1t00501 CDS=262-2229
Sequence

GTTTGTATTGTCAGTATTGATCTATCAATCGGCAAGGGGATAAGATACTTTTAGGCTGTA
TGTATTCTCTTGCCGTCGTGTTCAATAGTGGCTCTTATGTAAATTGATGGTACTAGGAGG
CTAGAACTTGAAGAAGAAAACACCCAACCGACATCGTCATCGTGACGCTGCGGTAGCGCG
CGTTGACCTGAGATTAGGGATTTGGATTTTGAAATTAAAATTAATATATCATGTTCGCGT
TGGACTGATTGGCAAGCGAAAATGGAAGAGCAAGGAGGGAAGGTGAGGGCCTTGATAGAC
AAGGCGACGAACTCGACGGAACGAGAGGTGGACCCACGTCTCCTCAAGGCCATTAAATGG
GTAGTTCGAAATTCGGATTCGGAGCTGCGACTCGCCGCTCAAACCCTCATGGACCTTATG
AAACGCGACCATTCTCAGGTCCGATATCTCACACTTCTCATAATTGATGAACTCTTCATG
CGATCAAAGCTTTTTAGGACCATTCTTGTTGAGAACATGGATCAGTTATTGAGTTTAAGT
ATTGGATTCAGAAGAAATTTACCACTTCCTGCGCCTCCAGCTATTGCATCTATTTTGCGA
TCAAAGGCTTTTGAATTTTTGGAGAAATGGAATGCTTCTTTTGGGGTTCACTACAGACAA
ATTAGATTAGGCTTTGATTACCTTAAAAATACTCTCAGGCTCCAGTTTCCTAATTTACAA
GCAAATGCAGCTCGGATTCAGCGGGAGAGACGGGAAAGAGAGATGAGGACAAAAGAGATT
TTACGAAACAAGTTTGAAATGCTGCGGCAAAATCTTTCTTCGATAAAGGAAGAAATACAG
TCGACAATAGATGAGATTGGAGAGTGTTTAGACATCATTCGTGCCAAGGAAGAAATTATG
CTGCTTGATCCCTTGGATGATGAAGATTTTGAGGAGTTCCATTCTTCTGAATTGAGGCAG
ATTCGCCTTGATTCATTGAAAGAAGGGGAAAAGGTTCACGAGGATGAAGATAATAAAGTA
GTTTTTGATGCACTGAGGGAGTTGTACAAGCTTCTAGTGACAAAGCATTTGGTTTTGGTC
CAAGAATGGATTTCTGTTCTTATTAGGGTGGAAGTGTCAGACAATAGGTCTAGAGATAAA
ATGCTGAAGGAGTTCATTGATATTCAAAATCGCCTCCAATTGGTGAAGAAGAAATGTGAA
GACTCTGGCTGTGGTCTTATAAACAATGTGAAACCTCTCATAGAAGATGAATTAGAGGAA
GATTTTTGGGAAGAGGGTAAGATTGGGTCTAGTGAGAGTGGGAGTTCGAATGCATCTAGT
AAGCACAATAGTAATCTGTCCATGGTATTGGCCTCCAGTGAGGTCATAGGTAAGGCTTCT
GAAGTCCCCAAACAGAAGTCTGATGGGAATGATTCTCTGGATAATGAAGGTAGTAAAATT
GATTCAACATTGCTCAGAAGTAAGCTTCTGGCAGAAGCTCCAGTGATTGTATGTGGTTCT
TTCTCAGATAATTTGAAAAGGGATGTTTTGGTTAATCAAAGGGGCATGGAGTTTGACAAT
CACTGGGGTAGGGTAGACTATGATGCAGTTATTCCAGCGGAGAAGATAGCAGAATTGAAC
CTTAGGGCAACTCTTTACAAAGAAGAGCAAGTAGAAATCCAACCATGCCGTGCTCCTTTG
AGGAAAGGAGGCCTTTGTCAGAGAAGGGATTTAGAAGTCTGCCCATTTCATGGACCCATC
ATTCCCCGAGATGACGAAGGAAATCCTATCAATCAGAGCACATCATCGATAGAAAAGAGC
TCTTTAACGGATGAGACTTTAACAGATTTGGGGTCTGATTTAGTGGAGCAATTAGCAAAA
CACGCTATAAAGAATGTAAGGGAGAGAGATAAAGAGGAAGCTAGGAAGAGGAAAATTGAT
AAACAGTTGCTGAATCGAGCAAAACTTGCAAAAGTACGGGAACACAATGAAGCAGTTTTA
CGGGATGCTGCCTTGGCTTCAACTTCAAGGTCTGCAACTGCAGGAGACGAGGCAGAAGAT
ACAAATGGGAGGAGATCGTCATCAAGAAACAAGAAGCAAACTCTAGCTTCCATGCTGCGA
AAGAAAGTAACTCCAAGAGATAGGTTAACTCGCAGACTTCTGAATACCCGAGCAAGGGAT
GCAACAATAAGACGGCTGAGAATGGGTGAGGATGCAATTTACAGAGAGTCCTTTCCAAAT
CAGTGGTAAATGTTTTGTAGTAAGGCTCTGGGATTATGGCGTGCACTCAGCACTGTGTTG
ATGAATAGACAGTTTCATTTTTCATTTGTATAAAGGGGAACAAGAACCATTTCATGTTGA
TCTCTCAACAGATTGTGTGATTTTGAAGAGCATTGCTGTTATCCAAGAAGTTGGAAATCT
TTTGGATGCTGTTAGGCGTCCCTAGATATAGAATGAATAAGGAGCTTGCTTGTTAGCAAA
TTTTGTAAAATATGCGGTTGCTAGTTATTCTTTAAATGTTGTCACAGGTCTCATTTATTG
GACATAAATAAAGATTTCAATTGCGTGGTAAAACCACGGCTTTACTCTGATA