Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00488.1
CDS Infomation

gene=orange1.1t00488
Sequence

ATGGAAGATCAAGCCACCAGCCCGAAGGCACTGCAGCTATTCGTGAAGCTCCTAAACGGC
AAAACAACAACCCTAAATTTTACAACCTGCCATGTGTACGGTCACGAGATTAAGAATCGG
ATCTACGAAGCCACCAAAATTCCCACCCACCTTCAGCGCCTCATCTACTCCGGCCTCCAG
TTGAAGGACAGAACCGTAATATCGGATGATCACATCACCTTCAACCTCGTGCTCCGCCTC
TTGGGAGGCAAAGGCGGGTTCGGATCGTTACTCCGTGGCGCGGCCACGAAAGCAGGTCAA
AAGAAGACGAACAACTTCGACGCGTGTCGCGATATGAGTGGGCGGAGGCTGAGGCACGTG
AACGCGGAGAAGAAGTTGGAGGAGTGGAAAGCGGAGGAAGAGGAGAGGAGGCTGGAGAAA
ATCGCGGAGGAGTTTCTCAAGAAGGCGGCGAAAAAGGGGAAGAAAGGAGTTGGTGATGGA
GAAGCGGAGAAGTACGTGAAGAAATATAGAGATGAGTCGGCTGTGTGCATGGCTAAGGTG
GAAGAAGCGGTCAGACGGGCATGTGCCGATGGAAAACGAAAGGCGGTGAAGTCGAACGAA
ATGGAGGCCAAGAGGATGAAGATTTGGATGGGGAAAAGGAAATTGGGTGAAAGTGATGAT
GAGGATAGCAGTGAGGATGACGACGATGAGGAAAATGAGAAATCCATTGTTCTAAATAAT
GGGCATCATTCAGATACAAATAAGGAAACTGAGGGGAGTTCGGGTTCGGTTACTGGTGGG
AAACAAGATAGAGTGCTTTCTGGTGGAGGTTCGTGTGAGAGTGGTTCTGAGGAAGAGAAA
GATATTCTTGTGCAACAAAGCTCAGAATCTGGTGCAGAAGATGTATCTCGTGAGGAGAAT
GATATGGTTGAACCTGAAATTCATGTAGGAATGGTAATGCAGACTACAAGTACATCATGC
TTAGACACTGCATTGGTTTCCGAAACTAAAGCTGCTCAGGCTGAAAAGCATGATTGCTGT
GGTGAATTTGCATCTGAAAGTGTGGAGGAAATAATTGGTCAACCCCCAATCCCAAATGTC
TTGAATTCAGAAAATGAGGAAAGTAGTGAAAAGAGATCTGTTGATGCTGAACCCAGTGGT
TCCTCTGACTCTAAATCTGCAATTAATGATGGGGCAATTGTAGCAAATACAACATTGGCA
GAGCTGGAAAGGCCGTTAAATTTTGATGAATTCAATTCAGCAGCTGAGATGGAGGTTCTT
GGCCTCGAAAGATTGAAGTCAGAACTTCAAGCGCGTGGGCTGAAATGTGGGGGTACCTTG
CAAGAACGTGCTGCCAGGCTTTTCCTACTTAAATCTACACCTGTGGAGAAGCTTCCAAAG
AAGTTGCTTGCAAAGAAATGA

Peptide Sequence

PEP ID

orange1.1t00488.1
PEP Infomation
Sequence

MEDQATSPKALQLFVKLLNGKTTTLNFTTCHVYGHEIKNRIYEATKIPTHLQRLIYSGLQ
LKDRTVISDDHITFNLVLRLLGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHV
NAEKKLEEWKAEEEERRLEKIAEEFLKKAAKKGKKGVGDGEAEKYVKKYRDESAVCMAKV
EEAVRRACADGKRKAVKSNEMEAKRMKIWMGKRKLGESDDEDSSEDDDDEENEKSIVLNN
GHHSDTNKETEGSSGSVTGGKQDRVLSGGGSCESGSEEEKDILVQQSSESGAEDVSREEN
DMVEPEIHVGMVMQTTSTSCLDTALVSETKAAQAEKHDCCGEFASESVEEIIGQPPIPNV
LNSENEESSEKRSVDAEPSGSSDSKSAINDGAIVANTTLAELERPLNFDEFNSAAEMEVL
GLERLKSELQARGLKCGGTLQERAARLFLLKSTPVEKLPKKLLAKK*

Transcript Sequence

Transcript ID

orange1.1t00488.1
Transcript Infomation

gene=orange1.1t00488 CDS=197-1597
Sequence

GTAAAATGAGTATTCCTAAGTAGTTTCTATATACCGGATGGATAGGGAATGGGATAGGAT
TAGGAGGTCGTGTATAAAATTAGAGATAAAACGCCAACCACCCAAAATATACATCAACAA
TCGATAATCATTCAAGTTGAAATCAATAATCGATCTAATTTTGTTCAGAAACGAATACCC
TCGCACAAGCAAATCAATGGAAGATCAAGCCACCAGCCCGAAGGCACTGCAGCTATTCGT
GAAGCTCCTAAACGGCAAAACAACAACCCTAAATTTTACAACCTGCCATGTGTACGGTCA
CGAGATTAAGAATCGGATCTACGAAGCCACCAAAATTCCCACCCACCTTCAGCGCCTCAT
CTACTCCGGCCTCCAGTTGAAGGACAGAACCGTAATATCGGATGATCACATCACCTTCAA
CCTCGTGCTCCGCCTCTTGGGAGGCAAAGGCGGGTTCGGATCGTTACTCCGTGGCGCGGC
CACGAAAGCAGGTCAAAAGAAGACGAACAACTTCGACGCGTGTCGCGATATGAGTGGGCG
GAGGCTGAGGCACGTGAACGCGGAGAAGAAGTTGGAGGAGTGGAAAGCGGAGGAAGAGGA
GAGGAGGCTGGAGAAAATCGCGGAGGAGTTTCTCAAGAAGGCGGCGAAAAAGGGGAAGAA
AGGAGTTGGTGATGGAGAAGCGGAGAAGTACGTGAAGAAATATAGAGATGAGTCGGCTGT
GTGCATGGCTAAGGTGGAAGAAGCGGTCAGACGGGCATGTGCCGATGGAAAACGAAAGGC
GGTGAAGTCGAACGAAATGGAGGCCAAGAGGATGAAGATTTGGATGGGGAAAAGGAAATT
GGGTGAAAGTGATGATGAGGATAGCAGTGAGGATGACGACGATGAGGAAAATGAGAAATC
CATTGTTCTAAATAATGGGCATCATTCAGATACAAATAAGGAAACTGAGGGGAGTTCGGG
TTCGGTTACTGGTGGGAAACAAGATAGAGTGCTTTCTGGTGGAGGTTCGTGTGAGAGTGG
TTCTGAGGAAGAGAAAGATATTCTTGTGCAACAAAGCTCAGAATCTGGTGCAGAAGATGT
ATCTCGTGAGGAGAATGATATGGTTGAACCTGAAATTCATGTAGGAATGGTAATGCAGAC
TACAAGTACATCATGCTTAGACACTGCATTGGTTTCCGAAACTAAAGCTGCTCAGGCTGA
AAAGCATGATTGCTGTGGTGAATTTGCATCTGAAAGTGTGGAGGAAATAATTGGTCAACC
CCCAATCCCAAATGTCTTGAATTCAGAAAATGAGGAAAGTAGTGAAAAGAGATCTGTTGA
TGCTGAACCCAGTGGTTCCTCTGACTCTAAATCTGCAATTAATGATGGGGCAATTGTAGC
AAATACAACATTGGCAGAGCTGGAAAGGCCGTTAAATTTTGATGAATTCAATTCAGCAGC
TGAGATGGAGGTTCTTGGCCTCGAAAGATTGAAGTCAGAACTTCAAGCGCGTGGGCTGAA
ATGTGGGGGTACCTTGCAAGAACGTGCTGCCAGGCTTTTCCTACTTAAATCTACACCTGT
GGAGAAGCTTCCAAAGAAGTTGCTTGCAAAGAAATGAGAGTTTTATCCAGTCGGCCTTTT
ATCTGAGCTGGTGCCGCTGTAGCCTTTCTCAAGCACTTTGTTTGCTTCAAAAGAACATGA
CTAGATTTAAGTGTATGTATCATGTGTTGGCATCTAATGTTACCAGATGTTTTGTTTAAC
TGAAGTAATGATACTCTGATGCTTGATATGTTTTGGTTAACTGCAGTAATGATACTCTGA
TGGTTGATGTTGGAAACCTATCAAGTGAGGAAGTAATAAGAAAATAGTTTGTTTGTTCCT
C