Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00477.1
CDS Infomation

gene=orange1.1t00477
Sequence

ATGGAGCCCATACTGTTTCTTTCTTCCGCTAAAGCCACACTGTCTCCATCCTTTCCCTTA
TTCCTCTCTTACAAATCTCCCTTCCTTGAAAAGCCCAAACTTTATGTAAAATCCCACCTC
TCAGCCTCAACAACGCAAGTTGAAAAGTCTCAGTTTTGGGGTAAAGGTTTGGTTTTACAC
AAAAGATTCGGTTCTCCGGGTAATGTTAACAAACCCCACATACCCGTTGCTCCAGTTAGA
GCTTCTGTGAAGAGAAGGAAAGAGCTTCCCTTTGATAATGTGATTCAAAGGGACAAGAAG
CTCAAATTGGTGTCAAAGATTAGGAAGATTTTAGTAAGTCAACCTGATAGAATTATGTCC
CTTAAGCAATTGGGTAGGTTCAGAAGAGATTTGGGTCTCACAAAAAAGCGTAGGTTTATT
GCCTTGTTGAGGAAGTTCCCTGCTGTGTTCGAAATCATAGAAGAAGGGGTTTATTCATTG
CGGTTCAAATTGACACCAGAAGCTGAAAGGCTCTACTTAGAAGAGGTGAAGGTTAGGAAT
GAAATGGAAGATTTGTTGGTTACTAAATTGAGGAAATTGTTGATGATGTCACTAGAGAAG
CGGATTTTGTTGGAGAAAATTGCGCATTTAAAGACTGATCTTGGGCTACCGCTTGAGTTT
CGTGACACAATTTGTCATAGGTACCCCCAATATTTCCGTGTTGTTGCAACTGAGAGAGGC
CCTGCGTTAGAATTAACACATTGGGACCCCCAGCTTGCTGTATCAGCTGCAGAATTAGCT
GCGGAGGAAAATCGAATCAGAGAGTTGAAAGAAAAAGATTTGATTATTGATAGACCACTT
AAGTTCAATAGAGTGAAGCTTCCAAAGGGTCTTAATCTTTCCAAGGGTGAAACGAGAAGA
ATTTGTCAGTTTAGAGATATGCCATATATATCCCCTTATTCAGATTTTTCAGGATTAAGG
CCAGGAACACCAGAGAAAGAAAAGCATGCTTGTGGAATTGTTCATGAGATTTTGAGCCTC
ACTGTTGAGAAGAAAACTCTTGTGGATCACCTTACTCATTTCAGAGAGGAGTTTAGGTTC
TCTCAGCAAGTAAGGGGAATGCTGATAAGGCACCCTGATATGTTCTATGTCTCCTTGAAA
GGGGATAGAGATTCAGTTTTCCTCAGGGAAGCTTACCGTGATTCCCAATTGATAGATAAG
GATCGACTGTTGGTTATCAAAGAGAAATTCCGCGCGCTTGTCTCTGTTCCTAGATTTCCA
AAGAGAGGTGCTCCCCAGAAAGATGATCACTACTCTGACAGGACTGATGAACCAGAAGAG
GGAAGTGGTGAGGATGGAGAGGACTGGTCAATTGATGATTATATGACTGATGGTCAGTTT
GATGATGTTGATGATGGCAATGAAGATGATTGGAGTGATGAAGATGATGATATGCCTCCA
GATTTTGATGAAGATTATGGAACTGTAAAGATTGGAGAAAACAAATCAGCTAAACTGGTA
GATAGCTCTGTGAAGAAAAAAGAAAAGGTGCTAGCCCCTGTGTTTCCTGATGGTAGGCCA
AGAGAACGCTGGTAA

Peptide Sequence

PEP ID

orange1.1t00477.1
PEP Infomation
Sequence

MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH
KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS
LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN
EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG
PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR
ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF
SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP
KRGAPQKDDHYSDRTDEPEEGSGEDGEDWSIDDYMTDGQFDDVDDGNEDDWSDEDDDMPP
DFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW*

Transcript Sequence

Transcript ID

orange1.1t00477.1
Transcript Infomation

gene=orange1.1t00477 CDS=230-1804
Sequence

CAAGTGACGATATCCTCAATTCTTCGTTCATTGCCAACAGAAATATCAGTCTTTGCACTG
CAAAGGGTTTTTGTTCATAAACCCTAATCAAATTATTTATTCATTTCACTTCACAGAACG
AGCTTCGGCCTCCAAACTGAGACCAAAGAAGGCAGGTAATTCCTCTGTCTCTGTTTATGA
GCTTGGAGTTGCCCTTTTTATTTACCCTTATTTACAGTAAACTTGAAAAATGGAGCCCAT
ACTGTTTCTTTCTTCCGCTAAAGCCACACTGTCTCCATCCTTTCCCTTATTCCTCTCTTA
CAAATCTCCCTTCCTTGAAAAGCCCAAACTTTATGTAAAATCCCACCTCTCAGCCTCAAC
AACGCAAGTTGAAAAGTCTCAGTTTTGGGGTAAAGGTTTGGTTTTACACAAAAGATTCGG
TTCTCCGGGTAATGTTAACAAACCCCACATACCCGTTGCTCCAGTTAGAGCTTCTGTGAA
GAGAAGGAAAGAGCTTCCCTTTGATAATGTGATTCAAAGGGACAAGAAGCTCAAATTGGT
GTCAAAGATTAGGAAGATTTTAGTAAGTCAACCTGATAGAATTATGTCCCTTAAGCAATT
GGGTAGGTTCAGAAGAGATTTGGGTCTCACAAAAAAGCGTAGGTTTATTGCCTTGTTGAG
GAAGTTCCCTGCTGTGTTCGAAATCATAGAAGAAGGGGTTTATTCATTGCGGTTCAAATT
GACACCAGAAGCTGAAAGGCTCTACTTAGAAGAGGTGAAGGTTAGGAATGAAATGGAAGA
TTTGTTGGTTACTAAATTGAGGAAATTGTTGATGATGTCACTAGAGAAGCGGATTTTGTT
GGAGAAAATTGCGCATTTAAAGACTGATCTTGGGCTACCGCTTGAGTTTCGTGACACAAT
TTGTCATAGGTACCCCCAATATTTCCGTGTTGTTGCAACTGAGAGAGGCCCTGCGTTAGA
ATTAACACATTGGGACCCCCAGCTTGCTGTATCAGCTGCAGAATTAGCTGCGGAGGAAAA
TCGAATCAGAGAGTTGAAAGAAAAAGATTTGATTATTGATAGACCACTTAAGTTCAATAG
AGTGAAGCTTCCAAAGGGTCTTAATCTTTCCAAGGGTGAAACGAGAAGAATTTGTCAGTT
TAGAGATATGCCATATATATCCCCTTATTCAGATTTTTCAGGATTAAGGCCAGGAACACC
AGAGAAAGAAAAGCATGCTTGTGGAATTGTTCATGAGATTTTGAGCCTCACTGTTGAGAA
GAAAACTCTTGTGGATCACCTTACTCATTTCAGAGAGGAGTTTAGGTTCTCTCAGCAAGT
AAGGGGAATGCTGATAAGGCACCCTGATATGTTCTATGTCTCCTTGAAAGGGGATAGAGA
TTCAGTTTTCCTCAGGGAAGCTTACCGTGATTCCCAATTGATAGATAAGGATCGACTGTT
GGTTATCAAAGAGAAATTCCGCGCGCTTGTCTCTGTTCCTAGATTTCCAAAGAGAGGTGC
TCCCCAGAAAGATGATCACTACTCTGACAGGACTGATGAACCAGAAGAGGGAAGTGGTGA
GGATGGAGAGGACTGGTCAATTGATGATTATATGACTGATGGTCAGTTTGATGATGTTGA
TGATGGCAATGAAGATGATTGGAGTGATGAAGATGATGATATGCCTCCAGATTTTGATGA
AGATTATGGAACTGTAAAGATTGGAGAAAACAAATCAGCTAAACTGGTAGATAGCTCTGT
GAAGAAAAAAGAAAAGGTGCTAGCCCCTGTGTTTCCTGATGGTAGGCCAAGAGAACGCTG
GTAAAAGAAGGTGCAAATTGTCTCTATGTGCTGAAGGTCCCAAACTAGAGGTATAAAAGC
TGTCATCATTTGTCTTGGCTGATGCTTTCAGAGTATCAATGGTATTTGCCATCGGTCTTC
AAAAATGTAAGGCCTGAAACCTAATCATCAACTAAATCAATATGGGAAACTGCCAGCTAA
AGGGGAATGATAAATCATGTATTATGTTTCTGATGTGTAATAGTTAATGCTTTTTGTTAA
TATAGTGAAAACATTAGTTGTCTTTCAGAGCTAGACAGACTATTGCAAGTGGAATGTTCT
ACAAATGGTTGACTAGGAACTGTACTTTTTCCTGGGAGAGAGCTAATGGATTTATCATAG
ATATGAAATTTGTCATGATCTAAAAACTTATGGTGAAATGGCTGAACAAGCCTCATGATT
TCGAGTCATTGTATTTTGAGAAAACTTCATATGCAATCAAGATGTTTGTGGAAGTAATAA
TAGACCTTAAACTAATAGACTTTAAAAGATAAACTGACTCTTCTATTTTAGGGCACTGTG
TTTTGGGTATTCTAGTGTAATGTGTATTGCATTTTGTGATAGCCTTTTCAGATTATGCAA
CCATTGCAATTGTCAGTTAGTGGGTTGTTATAACATATAGATACAGGAGGATAGAAGAAC
ACATTATCAGTTCCGAATATGTCTTTTTCAGAACAAAGTAGAG