Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00464.1
CDS Infomation

gene=orange1.1t00464
Sequence

ATGTTAGAAAAGATGGAGACAGTGGATGTAGACGAATTGATAGAGGAATTCGAAACGATC
ACAAAGGACGCGGAGAGAATTCAAAGAGAGACTCTGAGGAAGATTTTGGAAGAAAACGCA
TCGGCTGAGTACTTGCAAAATCTCGGCCTCAATGGACGAACCGATCCCGAAAGTTTCAAG
TCTTGTGTTCCACTTGTCACTCATGAGGACTTGCAGCCTTATATTCAGAGAATTATAGAT
GGTGATATTTCACCAATCCTCACTGGCAAGCCCATTACGACTATATCACGGAGTTCTGGG
ACGACTCAAGGAAAGCCCAAATTTCTACCCTTTAATGATGAATTGATGGAAACCACCCTG
CAGATTTTTCGAACTTCCTACGCCTTTAGAAACAGAGAATTCCCAATTGGGAAAGGAAAG
GCCTTACAGTTTATATACGGCAGCAAGCAATCTAAAACTAAGGGGGGTCTGAATGCTGGA
ACTGCTACTACAAATGTCTATCGCAGTTCAACATTTAAAGCAGAAATGAAGGCGATGCAG
TCACAATGTTGTAGCCCTGATGAAGTAATCTTTGGTCCTGATTTCCACCAATCATTATAC
TGCCATCTCCTATGTGGGCTGATCTTCAGGGAAGAGATTCAACTTGTATTCTCAACCTTT
GCCCATAGTCTTGTTCATGCTTTTCGGACATTTGAGCTCGTTTGGGAAGAGCTATGTGAT
GATATAAGGGAAGGGGTTCTTTCCAGCAGAATCACTGTCCCTTCAATCAGGGCGGCTATG
TCAAAAATTCTCAAGCCAAATCCTGAATTGGCCGATTTGATCCATAAAAAATGCTCAGGA
TTGAGTAATTGGTATGGGTTAATACCTGAGCTTTTTCCTAATGCGAAGTACCTGTCTGGA
ATCATGACTGGGTCAATGGAGCATTATCTGAAAAAGTTGAGGCACTATGCAGGGGACCTT
CCTCTTATGAGCGCTGATTATGGTTCTTCTGAGGGGTGGATTGGAGCAAATGTGAATCCA
AGTTTGCCCCCAGAGTTGGCTACGTTTGCTGTGCTTCCTAATATCGGATATTTTGAGTTC
ATTCCTCAGAGGTTGGGGAATCTTGAGAGCCAAGTTCTTTGCATAGAACCCAAGCCAGTA
GGATTGACTGAAGTCAAAGTTGGGGAAGAGTATGAGATCATTGTCACCAATGTTGCAGGT
TTGTATCGGTACCGGCTAGGGGATGTGGTGAAGGTTATGGGCTTCCATAATTCAACCCCA
GAACTCAAATTTATTTGCAGGAGGAACCTATTGCTAACCATAAACATTGACAAGAACACT
GAGAAGGATTTGCAGCTATCTGTCGACGAAGCTGCCCAGCTTTTAGCTGAAGAAAAACAA
GAAGTAGTTGACTTTACGAGTCATGTTGATTTGTCAACAGATCCTGGTCACTATGTGATC
TTCTGGGAAGTCAGTGGTGAAGTCAATGACGAGGTCTTGAAAGAATGCTGCAATTGTTTG
GATCGTTCCTTTGTCGACGCAGGTTATGTCAGTGCACGCAAGGTCAATGCCATAGGGCCG
CTCGAACTCCGAGTTGTTTTGAAGGGCACCTTCCAACAGATTTTAGATCATTACCTTGGA
TTGGGAGCTGCTCTTAGTCAGTTTAAAACCCCTAGGTGCGTTGGACCTACCAACAAGACT
GTGTTGCAAATCTTATGTAATAACATTGGTAAGAGCTACTTTAGTACTGCTTACGGGTAA

Peptide Sequence

PEP ID

orange1.1t00464.1
PEP Infomation
Sequence

MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFK
SCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTL
QIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQ
SQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCD
DIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSG
IMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEF
IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTP
ELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVI
FWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLG
LGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG*

Transcript Sequence

Transcript ID

orange1.1t00464.1
Transcript Infomation

gene=orange1.1t00464 CDS=13-1752
Sequence

CTGCAGCTGAAAATGTTAGAAAAGATGGAGACAGTGGATGTAGACGAATTGATAGAGGAA
TTCGAAACGATCACAAAGGACGCGGAGAGAATTCAAAGAGAGACTCTGAGGAAGATTTTG
GAAGAAAACGCATCGGCTGAGTACTTGCAAAATCTCGGCCTCAATGGACGAACCGATCCC
GAAAGTTTCAAGTCTTGTGTTCCACTTGTCACTCATGAGGACTTGCAGCCTTATATTCAG
AGAATTATAGATGGTGATATTTCACCAATCCTCACTGGCAAGCCCATTACGACTATATCA
CGGAGTTCTGGGACGACTCAAGGAAAGCCCAAATTTCTACCCTTTAATGATGAATTGATG
GAAACCACCCTGCAGATTTTTCGAACTTCCTACGCCTTTAGAAACAGAGAATTCCCAATT
GGGAAAGGAAAGGCCTTACAGTTTATATACGGCAGCAAGCAATCTAAAACTAAGGGGGGT
CTGAATGCTGGAACTGCTACTACAAATGTCTATCGCAGTTCAACATTTAAAGCAGAAATG
AAGGCGATGCAGTCACAATGTTGTAGCCCTGATGAAGTAATCTTTGGTCCTGATTTCCAC
CAATCATTATACTGCCATCTCCTATGTGGGCTGATCTTCAGGGAAGAGATTCAACTTGTA
TTCTCAACCTTTGCCCATAGTCTTGTTCATGCTTTTCGGACATTTGAGCTCGTTTGGGAA
GAGCTATGTGATGATATAAGGGAAGGGGTTCTTTCCAGCAGAATCACTGTCCCTTCAATC
AGGGCGGCTATGTCAAAAATTCTCAAGCCAAATCCTGAATTGGCCGATTTGATCCATAAA
AAATGCTCAGGATTGAGTAATTGGTATGGGTTAATACCTGAGCTTTTTCCTAATGCGAAG
TACCTGTCTGGAATCATGACTGGGTCAATGGAGCATTATCTGAAAAAGTTGAGGCACTAT
GCAGGGGACCTTCCTCTTATGAGCGCTGATTATGGTTCTTCTGAGGGGTGGATTGGAGCA
AATGTGAATCCAAGTTTGCCCCCAGAGTTGGCTACGTTTGCTGTGCTTCCTAATATCGGA
TATTTTGAGTTCATTCCTCAGAGGTTGGGGAATCTTGAGAGCCAAGTTCTTTGCATAGAA
CCCAAGCCAGTAGGATTGACTGAAGTCAAAGTTGGGGAAGAGTATGAGATCATTGTCACC
AATGTTGCAGGTTTGTATCGGTACCGGCTAGGGGATGTGGTGAAGGTTATGGGCTTCCAT
AATTCAACCCCAGAACTCAAATTTATTTGCAGGAGGAACCTATTGCTAACCATAAACATT
GACAAGAACACTGAGAAGGATTTGCAGCTATCTGTCGACGAAGCTGCCCAGCTTTTAGCT
GAAGAAAAACAAGAAGTAGTTGACTTTACGAGTCATGTTGATTTGTCAACAGATCCTGGT
CACTATGTGATCTTCTGGGAAGTCAGTGGTGAAGTCAATGACGAGGTCTTGAAAGAATGC
TGCAATTGTTTGGATCGTTCCTTTGTCGACGCAGGTTATGTCAGTGCACGCAAGGTCAAT
GCCATAGGGCCGCTCGAACTCCGAGTTGTTTTGAAGGGCACCTTCCAACAGATTTTAGAT
CATTACCTTGGATTGGGAGCTGCTCTTAGTCAGTTTAAAACCCCTAGGTGCGTTGGACCT
ACCAACAAGACTGTGTTGCAAATCTTATGTAATAACATTGGTAAGAGCTACTTTAGTACT
GCTTACGGGTAATTGTAAGAAACTTGCAAATCTGATAATCTTTTTATAGGTATTGAAATC
TTTTCTGGGTCCCTTGGTCTCTTGATAGTCAATTGTGTAATCTACTTTCACATCCTCAAT
TCCTCATGTAAGACTGCCATTGCTAAGAATTAAGAAGATATACAC