Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00448.2
CDS Infomation

gene=orange1.1t00448
Sequence

ATGAGAGACGTGAACACGGATCTATTTGACCCGAGAACAGAAATGGATTCGGATATCTCG
CGTAGTGCTTCTTCCTCCGATGGAGATTTTGGGTTCGCTTTTAATGATAGTAATTTCTCA
GACCGGCTTCTTCGGATCGAGATCATGGGTGACCCTCCGGAGAGCAGGTCCGACGGAGAG
GGGTGCACTAGTATCGCCGATTGGGCTAGGGACCGTAAGAGGCGAAGAGAAGATATCAAG
AAGGACAACGGTTTGGATCTCTCTGCTTGCCCTGAGGAGCAGATTTTAAACCAGCCCGAT
ATGGATGATTGTGTGGGCTGTGAAAACCAAGATGAGGAAGTGGAGGCAATGATTGAAGGG
TCACCCTCAGGTGATGAAGCTGCAAATGGAAATGAGTCAAGCTGGAGCATGGATTGTTCT
ACAGTTGTGAGAGTTAAAACATTACACATAAGCTCTCCAATCTTAGCGGCAAAAAGTCCA
TTTTTCTACAAACTATTCTCAAATGGGATGAAGGAGTCAGAACAACGACATGTAGCGCTG
CGTATCAATGCATCTGAGGAAGCTGCCCTCATGGAACTTCTGAATTTTATGTACAGCAAT
ACTTTATCGACTACTGCAGCTCCTGCATTGCTTGATGTGCTTATGGCTGCGGACAAGTTT
GAGGTTGCTTCATGCATGCGATACTGCAGCCGTCTATTGAGGAATATGCCCATGACTCCA
GAGTCTGCATTGCTTTATCTGGAGCTTCCCTCCAGTGTCCTGATGGGTGAAGCAGTCCAG
CCATTGACCGATGCTGCGAGACAGTACCTTGCATCTCGATATAAGGACATGACCAAGTTC
CAAGATGAGGTAATGGCCTTGCCCCTTGCTGGAGTTGAGGCAATATTGTCTAGTGATGAT
CTTCAAATTGCTTCTGAAGATGCTGTATATGATTTTGTGTTAAAGTGGGCCAGAGCCCAG
TACCCGAGAGTGGAGGAGCGACGTGAGGTTTTGGGCTCACGTCTTGCACGCTTCATTCGC
TTTCCTCACATGACCTGCCGGAAGCTAAAGAAGGTTTTAACCTGTAATGACTTTGATCAT
GATGTTGCGTCCAAGTTAGTGCTTGAAGCTCTGTTCTTTAAGGCTGAAGCCCCACATCGA
CAACGAACCTTGGCGGCAGAGGAGTCGGTCACCTTGAATCGACGCTTTGTTGAACGTGCA
TACAAGTATCGGCCCGTCAAAGTAGTAGAATTTGAGCGTCCTCGGCAACAATGTGTGGTT
TACCTGGACTTGAAGCGGGAGGAGTGTGAAAATTTGTTCCCATCTGGACGCGTCTACTCT
CAAGCATTTCACTTGGGTGGGCAAGGGTTCTTCCTCTCTGCACACTGCAACATGGACCAG
CAGAGCTCTTTCCATTGTTTTGGGTTGTTCTTGGGGATGCAGGAAAAGGGGTCAGTGAGT
TTTGCTGTGGATTACGAGTTTGCAGCCAGGTCAAAGCCTACTGAGGAGTTTGTTAGCAAA
TACAAAGGCAACTACACATTCACTGGAGGCAAGGCAGTTGGATACCGAAACTTATTTGCC
ATACCATGGACATCCTTCATGGCGGATGATAGTCTTTACTTCATCAACGGTATCCTCCAC
CTCAGGGCTGAGCTTACTATCAGGCACTGA

Peptide Sequence

PEP ID

orange1.1t00448.2
PEP Infomation
Sequence

MRDVNTDLFDPRTEMDSDISRSASSSDGDFGFAFNDSNFSDRLLRIEIMGDPPESRSDGE
GCTSIADWARDRKRRREDIKKDNGLDLSACPEEQILNQPDMDDCVGCENQDEEVEAMIEG
SPSGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVAL
RINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTP
ESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDD
LQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDH
DVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVV
YLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVS
FAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILH
LRAELTIRH*

Transcript Sequence

Transcript ID

orange1.1t00448.2
Transcript Infomation

gene=orange1.1t00448 CDS=351-2000
Sequence

CGATCACGCATGTGGACCAAAACAAAACAAAACAAAACAAATGAAGGAACCAAATTTACC
AAACAAAACGAAACCAGCACGCACAACATAACATATTCTATATATATGAACCAGGGCAGG
CGACGGTGGGGGGGACGTGGGCTTCGGTTTTTCATTCATTCATTTCATTTTTCATTAATC
ATTCTATGCTTTCTTTCTAGCCATTTGCTCTTTGCAATTATAGATAACGCCGCCAGCTCA
CTATTTTAGGGTTTCAAGTTCGTAACATTTGTGCATTTTTTTTTTCCGATCCTCTCTTTC
TTTGAGAAAGAGATTGAGTCAAGGGAGAGAGAGAGTGGGGGGTTTTCATAATGAGAGACG
TGAACACGGATCTATTTGACCCGAGAACAGAAATGGATTCGGATATCTCGCGTAGTGCTT
CTTCCTCCGATGGAGATTTTGGGTTCGCTTTTAATGATAGTAATTTCTCAGACCGGCTTC
TTCGGATCGAGATCATGGGTGACCCTCCGGAGAGCAGGTCCGACGGAGAGGGGTGCACTA
GTATCGCCGATTGGGCTAGGGACCGTAAGAGGCGAAGAGAAGATATCAAGAAGGACAACG
GTTTGGATCTCTCTGCTTGCCCTGAGGAGCAGATTTTAAACCAGCCCGATATGGATGATT
GTGTGGGCTGTGAAAACCAAGATGAGGAAGTGGAGGCAATGATTGAAGGGTCACCCTCAG
GTGATGAAGCTGCAAATGGAAATGAGTCAAGCTGGAGCATGGATTGTTCTACAGTTGTGA
GAGTTAAAACATTACACATAAGCTCTCCAATCTTAGCGGCAAAAAGTCCATTTTTCTACA
AACTATTCTCAAATGGGATGAAGGAGTCAGAACAACGACATGTAGCGCTGCGTATCAATG
CATCTGAGGAAGCTGCCCTCATGGAACTTCTGAATTTTATGTACAGCAATACTTTATCGA
CTACTGCAGCTCCTGCATTGCTTGATGTGCTTATGGCTGCGGACAAGTTTGAGGTTGCTT
CATGCATGCGATACTGCAGCCGTCTATTGAGGAATATGCCCATGACTCCAGAGTCTGCAT
TGCTTTATCTGGAGCTTCCCTCCAGTGTCCTGATGGGTGAAGCAGTCCAGCCATTGACCG
ATGCTGCGAGACAGTACCTTGCATCTCGATATAAGGACATGACCAAGTTCCAAGATGAGG
TAATGGCCTTGCCCCTTGCTGGAGTTGAGGCAATATTGTCTAGTGATGATCTTCAAATTG
CTTCTGAAGATGCTGTATATGATTTTGTGTTAAAGTGGGCCAGAGCCCAGTACCCGAGAG
TGGAGGAGCGACGTGAGGTTTTGGGCTCACGTCTTGCACGCTTCATTCGCTTTCCTCACA
TGACCTGCCGGAAGCTAAAGAAGGTTTTAACCTGTAATGACTTTGATCATGATGTTGCGT
CCAAGTTAGTGCTTGAAGCTCTGTTCTTTAAGGCTGAAGCCCCACATCGACAACGAACCT
TGGCGGCAGAGGAGTCGGTCACCTTGAATCGACGCTTTGTTGAACGTGCATACAAGTATC
GGCCCGTCAAAGTAGTAGAATTTGAGCGTCCTCGGCAACAATGTGTGGTTTACCTGGACT
TGAAGCGGGAGGAGTGTGAAAATTTGTTCCCATCTGGACGCGTCTACTCTCAAGCATTTC
ACTTGGGTGGGCAAGGGTTCTTCCTCTCTGCACACTGCAACATGGACCAGCAGAGCTCTT
TCCATTGTTTTGGGTTGTTCTTGGGGATGCAGGAAAAGGGGTCAGTGAGTTTTGCTGTGG
ATTACGAGTTTGCAGCCAGGTCAAAGCCTACTGAGGAGTTTGTTAGCAAATACAAAGGCA
ACTACACATTCACTGGAGGCAAGGCAGTTGGATACCGAAACTTATTTGCCATACCATGGA
CATCCTTCATGGCGGATGATAGTCTTTACTTCATCAACGGTATCCTCCACCTCAGGGCTG
AGCTTACTATCAGGCACTGACTCTTGCATCATTAGAGTCTTTCTTGTTGAGGCTTCCAAT
TGATTTAAAACTTTTGGTAGCACTAACCTCTTTTGTTTCTCTCATGTTGAATGTAATAAG
TAGGCATTCAGCGCTATAGATACTTGTGTTCAGAGGTTCATATACAATTAGAATTTGCTT
TGTGTCATGTTATTATTACTGGGATGAGTTGTGTTTGGGAAATGGAAACTGAGGGAGAAT
ATGTAAAATGTGGTTGGTTCCTGGAACGATGAGTTTGTATTCTGACAGGTTTCAGCTGAA
GAATGCAGCTCTTTTAGAACTCTATTTTGTCAAACTTGCATTTGTGTGCTTACTGCTTAG
TAGGTACCTCTGCCTCGATGACAATATTTGACCGTTAGAAGACTGTATTTTGGTCTCATG
CGTTCTGGATGTCTCTTCCCATATTTTTAAATACCGGAGCGGGCTTTTTGGACTC