Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00436.1
CDS Infomation

gene=orange1.1t00436
Sequence

ATGGAGGCCGAGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCACAACAAGGCAGAA
GATTTGTGGATCTCTATACAGGGGAAAGTTTACGACGTTACAGAATGGGCAAAACAACAT
CCTGGCGGCGACGTTCCGCTCTTGAATTTGGCTGGCCAAGATGTTACCGATGCGTTTATA
GCGTATCATCCAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACAGGCTATTATGTT
CAAGATTTCGAAGTATCTGAAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTTGCC
AAACAGGGTATGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCTTACATGTGTAGCA
TTGATGTTTGTTGTTGTGGTTTATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTG
GGTTCAGGCATGTTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATTCC
GGGCATTATCAGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAGCTTATTTCAGGA
AATTGTTTAACAGGAATCAGCATTGCTTGGTGGAAGTGGACTCACAATGCCCACCACATT
GCTTGCAACAGCCTTGATTACGATCCAGATCTTCAACACATCCCAGTTTTTGCGGTATCT
ACGCGTTTATTTAATTCAATTACATCTGTCTTCTATGGTAGAAAATTAGATTTCGATCCT
GTCGCTAGATTCCTTGTGAGTTACCAGCATTGGACATTTTACCCTGTTATGTGTGTGGCC
AGAGTAAATTTATATTTACAGACACTTTTGTTATTGTTTTCAAAGCGTAAGGTCCCAGAT
AGAGCCTTGAACATCATGGGTACTCTTGTCTTTTGGACTTGGTTCCCACTTCTAGTTTCA
TATCTACCAAACTGGCCTGAAAGGGTGATGTTTGTGATGGCAAGTTTTACTGTCACGGCC
ATCCAACACATTCAGTTTTGTTTAAACCACTTTGCTGCAAATGTGTATCTTGGTCCGCCT
AAAGGGAATGACTGGTTTGAGAAGCAAACAAGTGGGACATTGGATATTGCTTGCTCATCT
TGGATGGATTGGTTTCATGGTGGGTTGCAGTTTCAGCTAGAGCATCATTTGTTTCCAAGG
TTGCCAAGGTGCCAATTGAGGAAGATTTCGCCGGTGGTGAGGGATCTTTGCAAGAAGCAC
AATATGCCTTACAGAAGTTTGTCCTTCTTTGAGGCCAATGTGTGGACCATTAGGACTCTG
AGGGGTGCTGCTCTGCAAGCTCGGGACCTCACAAACCCTGTCCCCAAGAATTTGCTTTGG
GAAGCTCTTAATACTCATGGCTGA

Peptide Sequence

PEP ID

orange1.1t00436.1
PEP Infomation
Sequence

MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFI
AYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVA
LMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISG
NCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSTRLFNSITSVFYGRKLDFDP
VARFLVSYQHWTFYPVMCVARVNLYLQTLLLLFSKRKVPDRALNIMGTLVFWTWFPLLVS
YLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYLGPPKGNDWFEKQTSGTLDIACSS
WMDWFHGGLQFQLEHHLFPRLPRCQLRKISPVVRDLCKKHNMPYRSLSFFEANVWTIRTL
RGAALQARDLTNPVPKNLLWEALNTHG*

Transcript Sequence

Transcript ID

orange1.1t00436.1
Transcript Infomation

gene=orange1.1t00436 CDS=291-1634
Sequence

CTTTACTCAACACGTATCCTACCACGAAACATACCAAAATGACCGTTTAGCCGCAACCCT
CGCTGATAAAGAGCCCAAAAATATTATCATAAAAAACGCTCCGAAGAAACACAGAGAGGG
AAAAAATAAAAATAGAGATCTCAAAAACCGAAAGCAAACCAAATCATCACATCCCTTGCT
ATTTCACTTTGAGCAAAACTTGCGGGATTTTCTTGATTTGATTTTGCTTCCCAGGTGGCA
TAACCTATCTTCCCCCACAACACTTTCCAATTTTTCAATCTGCTGCCTTAATGGAGGCCG
AGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCACAACAAGGCAGAAGATTTGTGGA
TCTCTATACAGGGGAAAGTTTACGACGTTACAGAATGGGCAAAACAACATCCTGGCGGCG
ACGTTCCGCTCTTGAATTTGGCTGGCCAAGATGTTACCGATGCGTTTATAGCGTATCATC
CAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACAGGCTATTATGTTCAAGATTTCG
AAGTATCTGAAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTTGCCAAACAGGGTA
TGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCTTACATGTGTAGCATTGATGTTTG
TTGTTGTGGTTTATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTGGGTTCAGGCA
TGTTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATTCCGGGCATTATC
AGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAGCTTATTTCAGGAAATTGTTTAA
CAGGAATCAGCATTGCTTGGTGGAAGTGGACTCACAATGCCCACCACATTGCTTGCAACA
GCCTTGATTACGATCCAGATCTTCAACACATCCCAGTTTTTGCGGTATCTACGCGTTTAT
TTAATTCAATTACATCTGTCTTCTATGGTAGAAAATTAGATTTCGATCCTGTCGCTAGAT
TCCTTGTGAGTTACCAGCATTGGACATTTTACCCTGTTATGTGTGTGGCCAGAGTAAATT
TATATTTACAGACACTTTTGTTATTGTTTTCAAAGCGTAAGGTCCCAGATAGAGCCTTGA
ACATCATGGGTACTCTTGTCTTTTGGACTTGGTTCCCACTTCTAGTTTCATATCTACCAA
ACTGGCCTGAAAGGGTGATGTTTGTGATGGCAAGTTTTACTGTCACGGCCATCCAACACA
TTCAGTTTTGTTTAAACCACTTTGCTGCAAATGTGTATCTTGGTCCGCCTAAAGGGAATG
ACTGGTTTGAGAAGCAAACAAGTGGGACATTGGATATTGCTTGCTCATCTTGGATGGATT
GGTTTCATGGTGGGTTGCAGTTTCAGCTAGAGCATCATTTGTTTCCAAGGTTGCCAAGGT
GCCAATTGAGGAAGATTTCGCCGGTGGTGAGGGATCTTTGCAAGAAGCACAATATGCCTT
ACAGAAGTTTGTCCTTCTTTGAGGCCAATGTGTGGACCATTAGGACTCTGAGGGGTGCTG
CTCTGCAAGCTCGGGACCTCACAAACCCTGTCCCCAAGAATTTGCTTTGGGAAGCTCTTA
ATACTCATGGCTGAGTTGTGTTTTTCTTTTTTTAATATATAAAATACATTAACAGATGCC
TATCGAGATTTTATAGCCACAAGTTATTTTGCCCCCAACGAATATTTTTTTGGCTCTTGA
TTTGGCCTCTTGGCTTGGGGTCGTCATTCGTATAGGATGATGAATAAATGCTCTTTCTAG
CAATATTTTTTTATTCACAGTTGTAATCAGATAATGACTCGCGGATTCAATTAAGCCTCT
CTTTTTTTTTTTTTTTTTGCCCCTTTCTGTGTTTATTTTACCATGTTGGAGAGTGTATTA
CGAATCTCATTGGCACGGAAGATGTGTCTTATCAGCATCGTATTCTATTATGTCAGATTT
TAAGCTAGCCTGTTGCAATGACTTATCCTTTGGACTTACAGAATCCAGGTAACGTTAACA
AGAATGCCATTTTGCTAAGTTTGTACACATAAATCACACTAGTCAGAAAACAGGCCATTT
TCTTTTGTGTTTCCTTAATGAGCCATGCCATGTGAATTTGGTTTTTTTGGATCGCAAAGC
CCTGAAGGCTAATGATCGATGGTCACCCAAGCATGAAGGCTATACATGACATATAAGCCT
AGAGGGAGTGACTTCCTGAAAAGCCCATTTTTAATACGTAGGGCCAAATAAAATAAAAAG
GTATTATAATAACAAAAGTCTCACTTTTCTAACAACCCTCCATTTTTTTTTACTTTATTC
TGACCTTCTCCGAATAAAAAATAAGCCTTCAAAATGCCCACTCTGTTTTCTCCATCTTTT
TGGCTTTTCGCGCAATGTCAAAACTCAAAACCTGAACAGAAGAATTAGCAAATTCAAGTT
GCGTTCAATTTTACTACTAAAATTCCTTTCTTTGGATTGTTGAAAAGAAATAAAGAATTC
CCTTTACAAAAC