Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00420.1
CDS Infomation

gene=orange1.1t00420
Sequence

ATGGAAATGATTCTAACGAAACAACCAAAATTCCTTCTTAAGCGCCATCACTTACCCCTC
CTCCGCCACTTTTGCACCGAACATAACTCGCCGTTGCCGCAAGTCTCTGAATCATCAATT
ATAATAACTCAAGCCTTGGACGTCCTCCTCCAAACCCCAGACAATGAATGGACCTCCTCC
CCCCAAATCAAAAACCTCCTCTTCTCTTCGACTTCTCTCTCGCCTCAACTCTTTTTCCAA
ATCACCCGCCGCTTCCCCTCCTCTTCACGAGCCCTCTCTTTCTTCAATTTCCTTCAATCC
AATTTGCCTACAGAAGCTAACACCTCGTCACTCTCATATGCATATCAAGCCGTCTTTGAG
CTCGCCATTCGTGAACGCATGTCGCCAGAAAGCCTCTTTGACCTTTATAAAGCGTGCAAA
GACCAAAACATTCCTCTTTCTATCAATTCCGCCACGCTTCTTATTCGCTTCTTTGGCAAG
GTTAGTATGTATGATTACTCGCTTCTCGTGTACAATGAACTCGACAACAATTTGAGAAAC
ACACATGTGCGCAATGTGTTGATTGATGTTCTGTTGAGATGCGACCATGATCGCGATGCC
TTCAATGTGCTCGACGAAATGCTTGACCGAGAATCCCAGTTTCCTGTTAATGAACTTACT
GGGGATATTGTTTTTTATGCATTGATGAGGAGGGAACATGTGAAGAATAGTGTGACTGAT
GAGGAATTAGTTGGTTTAGTTAGTAAATTCGCTGAACATGGTGTTTTTCCTAATGCAGTT
TGGTTGACTCAGTTGATTACTAGATTTTGTAGAAAGGGGAAAACTGATGAAGCTTGGGAT
GTTTTACATGTGTTGATGAAGTTCGATGCTCCTTTGGAAGCTGCTTCTTGCAATGCGCTT
CTGAATGCTTTAGGTAGGGAGGGAGATTTTAAGAGAATGAATCAACTTTTCACGGAGATG
AAGGAAAATGATATTGAGCCAAGCGTTGTGACTTTTGGGACTATTATCAACAGATTATGC
AAGCTGTATAGGGCGGATGAAGCATTAGAGGTGTTTGAGAAAATGATTGCAGGAAAAGAA
ACTGCTGAGATATCTGTTGAGCCAGATGTGATCATTTTTAATACTCTGATTGATGGACTG
TGTAAGGTGGGGAAGCAAGAAGAAGCATTGGGTTTGATTGAACAGATGAGACTGAGACTG
CAAAAGGGTTGTATGCCTAATGCTGTTACCTACAATTGCCTAATCAATGGGTTTTGTAAA
TCAGGAAATATTGAGAAGGGGCTAGAGCTTTTTCATCTTATGAAGCAGGAGGGAGTTACA
CCAAATGTAGTTACTCTTAATACATTGGTTGATGGCATGTGTAGACATGGAAGAATTAAC
AGTGCAGTTGAGTTTTTCCAGGAGGTGACGAGGAAAGGTCTATGTGCTAATGCTGTTACT
TACACAATCTTGATAACTGCTTTTTGTAATGTCAACAATTTTCAAGAGGCAATAAAATGG
TTCGATGATATGTCTAGAGCTGGATGCTCTGCTGATTCAGTTGTTTACTTTACCTTGATC
TCCGGTTTGTGTCAAGCCGGAAGGATGAACGATGCCAGTTTAGTTGTATCAAAGTTAAAA
GAAGCTGGGTTCCGCCCTGACATTGTGTGCTACAATCATTTGATTAGTGGGTTTTGCAAG
AAAAAGATGTTGGATAAAGCTTATGAAGTGCTCCAGGAAATGGAGGATATCGGAATGACG
CCCAATTCTGTCACATATAACACTTTGATTTCCTTTTTGAGCAAATCTGGCAACTTTTCA
GCTGCCCGTAGAGTGTTGAAAAAGATGGTTAAGGAAGGTTTGGTGCCTACTGTTGTTACA
TATGGAGCTCTAATTCATGCTTTCTGCGTGAATGGCCATGTTGATGAAGCCATGAAGATT
TTCAAAGAATTGAGTTCTTCATCAAATGTGTCGCCAAACACTGTAATATACAACATTCTC
ATTGACTCATTGTGCAAGAATAATCAAGTAGAACTTGCTCTTTCTCTAATGGAAGAGATG
AAAGTAAAGGAGGTAAGGCCTAATACTAACACATACAATGCTATGTTTAAAGGCCTCCGT
CAGAAGAATATGTTGGATAAAGCATTTAAATTGATGGATAGGATGATTGAGCATGCTTGT
CATCCTGATTATATATCCATGGAGATTCTTACAGAATGGCTTTCTGAAGCTGGTCAAACA
GAAAAGTTGAAGAAGTTTGTACAAGGATATGCTGTTTCGGCTGCTCCTGCATAG

Peptide Sequence

PEP ID

orange1.1t00420.1
PEP Infomation
Sequence

MEMILTKQPKFLLKRHHLPLLRHFCTEHNSPLPQVSESSIIITQALDVLLQTPDNEWTSS
PQIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFE
LAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN
THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD
EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL
LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE
TAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK
SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVT
YTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLK
EAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS
AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNIL
IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC
HPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSAAPA*

Transcript Sequence

Transcript ID

orange1.1t00420.1
Transcript Infomation

gene=orange1.1t00420 CDS=142-2415
Sequence

CCAGAAGCCCGAAACTAGAATGGTAAGGCTGAGCCTGAGGCAGTAAAATTCCCCCGAGCA
TCCCAATGCCGTCAGTCGATAACTGTTAAAACTGAACCAAAAACCCTCGCGACTGCTCCT
GCGCTCATTTTTCCCAACGAAATGGAAATGATTCTAACGAAACAACCAAAATTCCTTCTT
AAGCGCCATCACTTACCCCTCCTCCGCCACTTTTGCACCGAACATAACTCGCCGTTGCCG
CAAGTCTCTGAATCATCAATTATAATAACTCAAGCCTTGGACGTCCTCCTCCAAACCCCA
GACAATGAATGGACCTCCTCCCCCCAAATCAAAAACCTCCTCTTCTCTTCGACTTCTCTC
TCGCCTCAACTCTTTTTCCAAATCACCCGCCGCTTCCCCTCCTCTTCACGAGCCCTCTCT
TTCTTCAATTTCCTTCAATCCAATTTGCCTACAGAAGCTAACACCTCGTCACTCTCATAT
GCATATCAAGCCGTCTTTGAGCTCGCCATTCGTGAACGCATGTCGCCAGAAAGCCTCTTT
GACCTTTATAAAGCGTGCAAAGACCAAAACATTCCTCTTTCTATCAATTCCGCCACGCTT
CTTATTCGCTTCTTTGGCAAGGTTAGTATGTATGATTACTCGCTTCTCGTGTACAATGAA
CTCGACAACAATTTGAGAAACACACATGTGCGCAATGTGTTGATTGATGTTCTGTTGAGA
TGCGACCATGATCGCGATGCCTTCAATGTGCTCGACGAAATGCTTGACCGAGAATCCCAG
TTTCCTGTTAATGAACTTACTGGGGATATTGTTTTTTATGCATTGATGAGGAGGGAACAT
GTGAAGAATAGTGTGACTGATGAGGAATTAGTTGGTTTAGTTAGTAAATTCGCTGAACAT
GGTGTTTTTCCTAATGCAGTTTGGTTGACTCAGTTGATTACTAGATTTTGTAGAAAGGGG
AAAACTGATGAAGCTTGGGATGTTTTACATGTGTTGATGAAGTTCGATGCTCCTTTGGAA
GCTGCTTCTTGCAATGCGCTTCTGAATGCTTTAGGTAGGGAGGGAGATTTTAAGAGAATG
AATCAACTTTTCACGGAGATGAAGGAAAATGATATTGAGCCAAGCGTTGTGACTTTTGGG
ACTATTATCAACAGATTATGCAAGCTGTATAGGGCGGATGAAGCATTAGAGGTGTTTGAG
AAAATGATTGCAGGAAAAGAAACTGCTGAGATATCTGTTGAGCCAGATGTGATCATTTTT
AATACTCTGATTGATGGACTGTGTAAGGTGGGGAAGCAAGAAGAAGCATTGGGTTTGATT
GAACAGATGAGACTGAGACTGCAAAAGGGTTGTATGCCTAATGCTGTTACCTACAATTGC
CTAATCAATGGGTTTTGTAAATCAGGAAATATTGAGAAGGGGCTAGAGCTTTTTCATCTT
ATGAAGCAGGAGGGAGTTACACCAAATGTAGTTACTCTTAATACATTGGTTGATGGCATG
TGTAGACATGGAAGAATTAACAGTGCAGTTGAGTTTTTCCAGGAGGTGACGAGGAAAGGT
CTATGTGCTAATGCTGTTACTTACACAATCTTGATAACTGCTTTTTGTAATGTCAACAAT
TTTCAAGAGGCAATAAAATGGTTCGATGATATGTCTAGAGCTGGATGCTCTGCTGATTCA
GTTGTTTACTTTACCTTGATCTCCGGTTTGTGTCAAGCCGGAAGGATGAACGATGCCAGT
TTAGTTGTATCAAAGTTAAAAGAAGCTGGGTTCCGCCCTGACATTGTGTGCTACAATCAT
TTGATTAGTGGGTTTTGCAAGAAAAAGATGTTGGATAAAGCTTATGAAGTGCTCCAGGAA
ATGGAGGATATCGGAATGACGCCCAATTCTGTCACATATAACACTTTGATTTCCTTTTTG
AGCAAATCTGGCAACTTTTCAGCTGCCCGTAGAGTGTTGAAAAAGATGGTTAAGGAAGGT
TTGGTGCCTACTGTTGTTACATATGGAGCTCTAATTCATGCTTTCTGCGTGAATGGCCAT
GTTGATGAAGCCATGAAGATTTTCAAAGAATTGAGTTCTTCATCAAATGTGTCGCCAAAC
ACTGTAATATACAACATTCTCATTGACTCATTGTGCAAGAATAATCAAGTAGAACTTGCT
CTTTCTCTAATGGAAGAGATGAAAGTAAAGGAGGTAAGGCCTAATACTAACACATACAAT
GCTATGTTTAAAGGCCTCCGTCAGAAGAATATGTTGGATAAAGCATTTAAATTGATGGAT
AGGATGATTGAGCATGCTTGTCATCCTGATTATATATCCATGGAGATTCTTACAGAATGG
CTTTCTGAAGCTGGTCAAACAGAAAAGTTGAAGAAGTTTGTACAAGGATATGCTGTTTCG
GCTGCTCCTGCATAGAGTAGCTGTTGGGCGGCGATGTTAGGATTCTATTGCAATCTGCTG
CTCTGATGAGATGAGCTGGCCGTGCCCCGTTAGGTCGCACACACAAGTTAATTGGAGGCC
CCAAAGTGTAATGGGTATTCTTTTAGTGCTTTGAAGCTGCAATTTCAAGGGTTACAAGTC
CATGGCAGATTACATCCTCTCCTTAAAAAGACTCGAGAAAAGAAGCATGCAGATGCTTGT
GATGCACGTGATCTAGTTATATGCAATTTCAATTTGTTTACATCTAGAAAGTTAAATTAT
TTGTTACTCAATGGTCTTTGACAACAAAGGAAGAGAACCGAAATTGTTAGTATGATGTAA
ATCTATATTGGAAGGACCAGTGAGAACTATTCGTATCGTTTTTCTTCTGTATACATCATC
CAGATCTGCTGGTATGAGACCAGATCAAATAGGTGCTGTTGATGATGTTAGAACCGAAAT
GGTTCATTGTTTTGTTAATTTTTTGAGATATAATTTCCGTCCGGGACAGTTAAAAAGAGT
AGATTAATCCTAGCCTGTCAAATATTCTATTCC