Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00416.1
CDS Infomation

gene=orange1.1t00416
Sequence

ATGGGAATCTTGTCTAAGATTGCTACAAACAATGGCCACGGCGAAGACTCGGCTTACTTC
GACGGGTGGAAGGCATTTGATAGGAACCCTTTTCACCCAACTCAAAATCCTGGGGGTGTC
ATTCAACTTGGTCTTGCAGAGAATCAGCTTTGCTTCGATTTGATCAAGGATTGGATTACC
AAAAACCCATATGCATCAATTTGCACAGCTGAAGGTGTTGAAGTCTTCAAAGATATTGCT
ATCTTTCAGGACTATCATGGCCTCCCGGAATTTAGACAGGCCGTGGCAAAGTTTATGGGG
AAAGGGAGAGGCGGCAGGGTAACATTTGATCCAGATCGTATAGTTATGGGTGGCGGAGCA
ACTGGAGCTAACGAGCTTATCATGTTTTGCTTAGCCAATCCTGGCGATGCTTTTCTTGTG
CCTTCACCTTATTATGCAGCATTCGACCGTGATCTGTCATGGCGCACTGGGGTACAAATT
GTCCCAGTTCACTGCGACATCTCCAACAATTTCAAAATAACGAGAGAAGCACTGGAGGCA
GCTTACGAAAGGGCCCAAGAAGCCAGCATCAACATCAAAGGCTTGATCATAACAAACCCT
TCGAATCCACTAGGCACAACTTTGGACAGAGACACACTTAAAAGCTTAGTGAGCTTCATC
AATGACAAGAACATTCACCTTGTATGCGACGAGATTTATGCGGCCACTGTCTTCAGCTCT
CCTAAGTTCACGAGCGTTGCTGAAGTCATTCAAGAAATGGACTGCAATCGTGACCTCATT
CATATCATTTACAGCTTGTCTAAGGACATGGGGCTCCCTGGCTTTAGAGTTGGCATTGTG
TACTCGTTTAATGATACTGTTGTGAATTGCGGCCGCAAGATGTCGAGCTTCGGTTTAGTC
TCTTCGCAGACTCAGTACTTGCTTGCTTCAATGCTCTCTGATGATGAGTTTGTCGATAAC
TTTCTCGTGGAGACCTCCAAGAGGTTAGCTAAGAGACACCATAATTTCACCAAGGGACTT
GAACAAGTTGGAATCAACTGCTTGAAAAGCAATGCGGGTCTTTTTTTTTGGATGGACTTG
CGTCATCTGCTTAAGGAAAAAACATTAGAAGGTGAAATTGCTCTGTGGCGCACCATTGTC
AACGATGTGAAGCTCAATGTTTCGCCTGGCTCTTCGTTTCAGTGTACTGAGCCTGGTTGG
TTTAGGGTTTGCTTTGCTAACATGGATGATGACACATTGCAAGTTGCACTAAACCGAATT
GCCGCATTTGTGCAACAGGATAAGGAAAGTGAGAAACCAACCAAGAAACGTTGGCAGCAG
AATCTTCGCGTCAGCTTCTCATCGAGGATCTACGAACAAGGTGTCATGTCGCCGCACATG
ATGTCTCCTCACTCTCCAATTCCCCAGTCGCCTCTCGTCCGGGCAAGGACTTAA

Peptide Sequence

PEP ID

orange1.1t00416.1
PEP Infomation
Sequence

MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT
KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA
TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA
AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS
PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV
SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL
RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI
AAFVQQDKESEKPTKKRWQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRART*

Transcript Sequence

Transcript ID

orange1.1t00416.1
Transcript Infomation

gene=orange1.1t00416 CDS=123-1556
Sequence

CTAAATTGCTAGAGCTCAGCTAAAAATATTCAACATTCCAATTTCAAGCTTCTCTAGCCA
TAACACAATAAAAAATACTGACCTTTTTTTTCTTTCGCATACAAGATTACTAAGAAGAGA
CAATGGGAATCTTGTCTAAGATTGCTACAAACAATGGCCACGGCGAAGACTCGGCTTACT
TCGACGGGTGGAAGGCATTTGATAGGAACCCTTTTCACCCAACTCAAAATCCTGGGGGTG
TCATTCAACTTGGTCTTGCAGAGAATCAGCTTTGCTTCGATTTGATCAAGGATTGGATTA
CCAAAAACCCATATGCATCAATTTGCACAGCTGAAGGTGTTGAAGTCTTCAAAGATATTG
CTATCTTTCAGGACTATCATGGCCTCCCGGAATTTAGACAGGCCGTGGCAAAGTTTATGG
GGAAAGGGAGAGGCGGCAGGGTAACATTTGATCCAGATCGTATAGTTATGGGTGGCGGAG
CAACTGGAGCTAACGAGCTTATCATGTTTTGCTTAGCCAATCCTGGCGATGCTTTTCTTG
TGCCTTCACCTTATTATGCAGCATTCGACCGTGATCTGTCATGGCGCACTGGGGTACAAA
TTGTCCCAGTTCACTGCGACATCTCCAACAATTTCAAAATAACGAGAGAAGCACTGGAGG
CAGCTTACGAAAGGGCCCAAGAAGCCAGCATCAACATCAAAGGCTTGATCATAACAAACC
CTTCGAATCCACTAGGCACAACTTTGGACAGAGACACACTTAAAAGCTTAGTGAGCTTCA
TCAATGACAAGAACATTCACCTTGTATGCGACGAGATTTATGCGGCCACTGTCTTCAGCT
CTCCTAAGTTCACGAGCGTTGCTGAAGTCATTCAAGAAATGGACTGCAATCGTGACCTCA
TTCATATCATTTACAGCTTGTCTAAGGACATGGGGCTCCCTGGCTTTAGAGTTGGCATTG
TGTACTCGTTTAATGATACTGTTGTGAATTGCGGCCGCAAGATGTCGAGCTTCGGTTTAG
TCTCTTCGCAGACTCAGTACTTGCTTGCTTCAATGCTCTCTGATGATGAGTTTGTCGATA
ACTTTCTCGTGGAGACCTCCAAGAGGTTAGCTAAGAGACACCATAATTTCACCAAGGGAC
TTGAACAAGTTGGAATCAACTGCTTGAAAAGCAATGCGGGTCTTTTTTTTTGGATGGACT
TGCGTCATCTGCTTAAGGAAAAAACATTAGAAGGTGAAATTGCTCTGTGGCGCACCATTG
TCAACGATGTGAAGCTCAATGTTTCGCCTGGCTCTTCGTTTCAGTGTACTGAGCCTGGTT
GGTTTAGGGTTTGCTTTGCTAACATGGATGATGACACATTGCAAGTTGCACTAAACCGAA
TTGCCGCATTTGTGCAACAGGATAAGGAAAGTGAGAAACCAACCAAGAAACGTTGGCAGC
AGAATCTTCGCGTCAGCTTCTCATCGAGGATCTACGAACAAGGTGTCATGTCGCCGCACA
TGATGTCTCCTCACTCTCCAATTCCCCAGTCGCCTCTCGTCCGGGCAAGGACTTAAAAGA
GGAATATTATATTTATTCTATCTACTCAAAAAATAAGTGGTGATTCCACGAAGTAACTGT
CATTTTTTCCCAGTAGCGTGGGTTCTGTCACCTTTTTGTGGGACTGCTAGATTTAATTAG
CGTGTTTTCACTGCGAAAAGCTAGGGGTGGTATCTTCTTAATTTAATTGATAATTGAACT
TTTGTGTTTCATATATGATGATGTTTGATTGTGTAATTCATCATATATAGTGGAAGTAAT
AGAATTTCAAAAAAATTTCATATGTTAGTAAGTAATCTTGTTTCTTGTTC