Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00363.4
CDS Infomation

gene=orange1.1t00363
Sequence

ATGGCTAGTGCTGCTCAAAACCAGGAGGGGGTGCCAGAAATCTTAAGAAAACAGCTTGCT
GTTGCTGTTAGGAGTATCCAATGGAGCTATGCAATTTTCTGGTCATTATCAGCTGCACAA
CAAGGGGTTCTAGAGTGGGGTGATGGGTACTATAATGGAGACATCAAGACTAGGAAGACA
ATGCAAGCAATGGAACTTACACCTGATAAAATAGGTTTACAAAGGAGTAAGCAACTAAGA
GAGCTTTACGAGTCTTTGCTGAAAGGAGAATCTGAGCTGGCTTATAAGAGGCCTTCTGCT
GCATTGTCTCCAGAAGATCTTACTGATGCAGAGTGGTATTACTTGGTTTGCATGTCCTTT
GTATTCAGTTCTGGCCAAGGTTTGCCAGGAAGAGCACTTGCAAACAGTGAAACAATCTGG
TTATGCAATGCTCAGTGTGCAGATAGTAAAGTATTCTCTCGCTCTTTATTGGCCAAGACT
GTCATATGCTTTCCTCATCTTGATGGTGTAATTGAACTTGGAGTCACTGAACTGGTCCCA
GAGGATCCTAGTCTCCTTCAACATATCAAAGCCTCATTATTAGACTTCTCAAAGCCTTTT
TGCTCTGAGAAATCTTCCTCTCCTCCTTACGATGAAGATGATGACAGTGACCCTCTGTGT
GCCAAGGTTAGCCATGAGATATTGGATACAGTGGCTTTGGAGAGCCTATATTCTCCCGGA
GAAGAAAACAAATTTGATGGGGAGGGAGTTTATGAACTACATGGAAACATCAATGAAGAA
TTGCACTTAGATTCTGCTGATGAATGCTCAAAGGGCTGTGAGCACAATCACCAGACAGAA
GAATCCTTCATGGTTGATGGTATAAATGGTGCAGCTTCTCAAGTTCAGAGTTGGCATTTT
GTAGATGATGACCTCAGCAATGGTATTCCAGACTCCATGCATTCTAGTGACCATAAATCT
GAATCTCTCGTGAATCAAGCAGAGGGTTTTCCTTCTTCCAAGGATGAAAACATGAGCCAC
ATTCAATTGAAAGAACTTCAAGAAGGCAATCATACAAAACTAAGTTTGTTGGATCTTGGG
ATAGTTGATGGTGCACACTACAGGAAAACTCTTTCTGCTATTTTTGGAAGTTCAAATCGG
TTGACTGAGAACCCGTGTTTCCTTAGTGTTGAGCACAAATCCAGTTTTGTAAGTTGGAAG
AAAGGAGGAATGGTTAAGAGGCATTGGCCAGGGATACAGCAGAACTTATTAAAGAAGATT
TTATTTTCAGTTCCTTTGATGCATGGTGGTTGTACTCATAGGTCCCAGAAAGAAATTTGC
AGAAAATATTGTCCTGTAACAATGGAAAGTGATAATTTCTGTGAAGAGCATATTTCATCA
GATAAGAGAACAGAGAACGAAAAATTTATGGTGCTAAGGTCAATGGTTCCATATATCAGT
GAGGTGATATATTCGACTGTTATCTGCTGA

Peptide Sequence

PEP ID

orange1.1t00363.4
PEP Infomation
Sequence

MASAAQNQEGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKT
MQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSF
VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKTVICFPHLDGVIELGVTELVP
EDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPG
EENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHF
VDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLG
IVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKI
LFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYIS
EVIYSTVIC*

Transcript Sequence

Transcript ID

orange1.1t00363.4
Transcript Infomation

gene=orange1.1t00363 CDS=513-1982
Sequence

AATAATTATTACGATAAAGCTGCCAAAGCAATTCATTCATTACTTGGGGCCGCCTTCAAA
GTTACTTCCCTCTTTTTCTTGGTATTAGTACTATGAGAAATTGGGAATGGGCGAAATGAG
TAGTATATTGGCATAGAAATTAAATTACTGAGAGCCACAGAATAGAATTTGCATTCAGAA
AATAATTTTTTCATGAACACTCTTTAATTGTGCATGACCCCACGTTTTTCGTTTCTTCTT
TTATAAAAGACTAACATATAGTCCACCTTTTTGAGTTCTCTTTTCTATAATTCTATAATT
CAGTAAGCTTTGCTTTTACAGCGCAGTAAGGACCTTGCTGCATATAACTGAACTCAATGT
GTGATATTTTGTACAACCAAATTTTGTTGACAGAATACAACTGGAGCTTCTTTTCTGTGA
AGGCTTTGCTTCTTGTTTGTTGACCATTTTGTCTGTTGATGGGCTTTCTTTCCGGTTATC
TAAGTTGAATTTACTGATTTTTGTGCTTGACAATGGCTAGTGCTGCTCAAAACCAGGAGG
GGGTGCCAGAAATCTTAAGAAAACAGCTTGCTGTTGCTGTTAGGAGTATCCAATGGAGCT
ATGCAATTTTCTGGTCATTATCAGCTGCACAACAAGGGGTTCTAGAGTGGGGTGATGGGT
ACTATAATGGAGACATCAAGACTAGGAAGACAATGCAAGCAATGGAACTTACACCTGATA
AAATAGGTTTACAAAGGAGTAAGCAACTAAGAGAGCTTTACGAGTCTTTGCTGAAAGGAG
AATCTGAGCTGGCTTATAAGAGGCCTTCTGCTGCATTGTCTCCAGAAGATCTTACTGATG
CAGAGTGGTATTACTTGGTTTGCATGTCCTTTGTATTCAGTTCTGGCCAAGGTTTGCCAG
GAAGAGCACTTGCAAACAGTGAAACAATCTGGTTATGCAATGCTCAGTGTGCAGATAGTA
AAGTATTCTCTCGCTCTTTATTGGCCAAGACTGTCATATGCTTTCCTCATCTTGATGGTG
TAATTGAACTTGGAGTCACTGAACTGGTCCCAGAGGATCCTAGTCTCCTTCAACATATCA
AAGCCTCATTATTAGACTTCTCAAAGCCTTTTTGCTCTGAGAAATCTTCCTCTCCTCCTT
ACGATGAAGATGATGACAGTGACCCTCTGTGTGCCAAGGTTAGCCATGAGATATTGGATA
CAGTGGCTTTGGAGAGCCTATATTCTCCCGGAGAAGAAAACAAATTTGATGGGGAGGGAG
TTTATGAACTACATGGAAACATCAATGAAGAATTGCACTTAGATTCTGCTGATGAATGCT
CAAAGGGCTGTGAGCACAATCACCAGACAGAAGAATCCTTCATGGTTGATGGTATAAATG
GTGCAGCTTCTCAAGTTCAGAGTTGGCATTTTGTAGATGATGACCTCAGCAATGGTATTC
CAGACTCCATGCATTCTAGTGACCATAAATCTGAATCTCTCGTGAATCAAGCAGAGGGTT
TTCCTTCTTCCAAGGATGAAAACATGAGCCACATTCAATTGAAAGAACTTCAAGAAGGCA
ATCATACAAAACTAAGTTTGTTGGATCTTGGGATAGTTGATGGTGCACACTACAGGAAAA
CTCTTTCTGCTATTTTTGGAAGTTCAAATCGGTTGACTGAGAACCCGTGTTTCCTTAGTG
TTGAGCACAAATCCAGTTTTGTAAGTTGGAAGAAAGGAGGAATGGTTAAGAGGCATTGGC
CAGGGATACAGCAGAACTTATTAAAGAAGATTTTATTTTCAGTTCCTTTGATGCATGGTG
GTTGTACTCATAGGTCCCAGAAAGAAATTTGCAGAAAATATTGTCCTGTAACAATGGAAA
GTGATAATTTCTGTGAAGAGCATATTTCATCAGATAAGAGAACAGAGAACGAAAAATTTA
TGGTGCTAAGGTCAATGGTTCCATATATCAGTGAGGTGATATATTCGACTGTTATCTGCT
GAAAATTATTTGATAATTCCTTGTCAGATGAAAATATAATTTCATGATTATGCAGGTTGA
CAAAGCATCAATTCTCAGTGACACAATTAAGTACTTGAAAAAGCTTGAGGCAAGAGTAGA
GGAGTTGGAATCTTGCATGTACTCAGTTGATTCTGAGCCAAGGCCAAAGAGAAATTACAC
AGAGATGGTGGAGCAGACATCTGATAACTATGACAACAAAAAGCTTGATAACCACAAGAA
GCCTTGGATAAACAAGAGGAAGGCTTGCGACATTGATGAAACTGACCCAGAACTTAATAA
ATTTGTTCCAAAAGATGGCCTGGCTGATGTAAAAGTCAGCATCCAAGAGATGGATGTTCT
AATTGAGATGAGATGTCCCTCTAGAGAATATATATTGCTCGATATCATGGATGCTATAAA
CAACCTGCACTTGGATGCCTATTCAGTGGTATCGTCAAATCTTGATGGAGTTCTCACATT
GGCCCTTAAATCTACGTTTCGGGGAGCAGCCATTGCACCAGCCGGGATAATCGAACAAGC
TCTTTGGAAGATCGCTGGTAAGTGTTAAGAAGTAAGATCTCAAACTAGTAATCAATTTGC
AGTTGTAGTCTTCTTCAATTGTGTAGGTTTAGTTCCTTAGTGTTTTGAATGCATAGTTGT
AATGAGAGAAAATCCTTCAGTGTAACTTATCTAGGATTTGCTATGTTGTATCCCACTTGA
ATAAAGCAATTTAATTTGACAATCCTTACTAGGTAGCGGGAAGATGACTACAATCGCACA
AACCATGTGATGATTCGATATCTTAAAGTAATCTATGTGGCTTCATAAACAAATAGGTTT
AATTTGTACTATTGGCAATGCGGTGAACGA