Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00360.3
CDS Infomation

gene=orange1.1t00360
Sequence

ATGTCAATTGTCTGTGGTATTCCCCTTCTTGAATGCGTATACTGTCTTGCGTGTGCCCGC
TGGGTTTGGAAGAAATGCCTCTACACTGCAGGTCATGAAAGTGAAAACTGGGGTCTTGCC
ACGGTTGAAGAATTCATGCCGGTTCCTCAACTTTGTCGCCTTATCCTAGCTGTTTATGAA
GATGATCTTCGCAATCCAATCTGGGAACCCCCTGGGGGTTATAGAATCAATCCAGATTGG
GTTATCTTACGAAAAAACTATGAAGAAACTCAATGCCGTGTGCCTCCTTACTTAATATAC
CTTGATCATAAGAATACTGATATAGTTTTGGCAATTAGGGGGCTTAACCTAGCAAAAGAA
GGTGATTATGCAATTTTGCTTGATAACAAACTTGGGCAGACAAAGTTTGATGGTGGATAT
GTTCACAATGGGTTATTGAAGGCTGCAAGGTGGGTTTTCGATGCCGAGTGTGAGTTTTTG
AGGGGGTTGGTTGAGAGGAACCCAGATTATACTTTGACATTTGCTGGGCATTCACTGGGG
GCAGGGGTGGTGGCATCGTTGGTGTTGATTGTGGTTCAGAATCTGGACAAGTTGGGGAAC
ATTGAGAGGAACAAAATCAGATGCTTTGCTATTGCACCTACTAGGTGTATGTCACTGAAT
TTGGCGGTGAGATATGCAGATGTCATCAATTCTGTTGTGCTTCAGGATGATTTCTTACCT
CGAACAACAATGGCACTGGAAGATGTTTTCAAATCACTTATCTGTTTGCCATGTTTGCTC
TGCCTTATGTGCCTGAAAGATACATGCACTCTGGAGGAGAAGATGCTTAAAGATCCAAGA
CGGCTATATGCTCCTGGTCGGCTATACCACATTGTCGAGCGGAAGCCCTTAAGGATAGGA
AGATTTCCTCCCGTTGTGAGGACTGCAGTTCCAGTAGATGGCAGGTTTGAGCACTTAGTT
CTTTCCTGCAATTTAACTGCTGACCATGCTATCATTTGGATAGAAAGAGAATCTGAAAAG
GCCCTTGATTTGATGCTAGAGAAAGATAGGATCATGGAGATTCCAGCTAAACAGAGGATG
GAGCGTCAGGAGTCACTTGCTCGAGAGCACAGTGTGGAGTACAAGGCAGCTCTTCAGAGG
GCTGCTGCTTTGGATATTCCACTAGCTTATTCACCTTCTCAGTATGGCACATTCCGTGAA
ATGCAAGAAGGGGAAACTTCTAGCAGATCATGTGAGCAAACTTCTTTGTTGTCATCTAAG
GGAAGGAGGGAAAGTTGGGATGAATTTGTAGAACGTTTTTTCGATGTTAATGAGTCCGGC
GAAATGGTGTTCAAGAAGCCTGTCTCATAA

Peptide Sequence

PEP ID

orange1.1t00360.3
PEP Infomation
Sequence

MSIVCGIPLLECVYCLACARWVWKKCLYTAGHESENWGLATVEEFMPVPQLCRLILAVYE
DDLRNPIWEPPGGYRINPDWVILRKNYEETQCRVPPYLIYLDHKNTDIVLAIRGLNLAKE
GDYAILLDNKLGQTKFDGGYVHNGLLKAARWVFDAECEFLRGLVERNPDYTLTFAGHSLG
AGVVASLVLIVVQNLDKLGNIERNKIRCFAIAPTRCMSLNLAVRYADVINSVVLQDDFLP
RTTMALEDVFKSLICLPCLLCLMCLKDTCTLEEKMLKDPRRLYAPGRLYHIVERKPLRIG
RFPPVVRTAVPVDGRFEHLVLSCNLTADHAIIWIERESEKALDLMLEKDRIMEIPAKQRM
ERQESLAREHSVEYKAALQRAAALDIPLAYSPSQYGTFREMQEGETSSRSCEQTSLLSSK
GRRESWDEFVERFFDVNESGEMVFKKPVS*

Transcript Sequence

Transcript ID

orange1.1t00360.3
Transcript Infomation

gene=orange1.1t00360 CDS=316-1665
Sequence

AATTGGTTATTTTCATTGGCAGGGGCCCAAGTTTGTTGTGCAGTGATCACCGTAAGCTTT
TCATTAGTTGACTTTGTTATGCATCGTTGTTGTTGTTGTTGGTCAGCACTCAGCTGATAT
GGTGACTTGTACAAGGTGAATTAGGTCTTTTTTTAGCTTGTTCCTGCATTTCTGAACTAC
CACTTTTCATTTTCATCGATATTCCCTTGTGAATATTGTTTGGTACCGTTCATCCAACTT
TCAAAGTGATATTGACATTTCTACGATAAGCCTTGTCGCTTAATCCATGTTAAAATACTT
GCTCTATAGGCACCTATGTCAATTGTCTGTGGTATTCCCCTTCTTGAATGCGTATACTGT
CTTGCGTGTGCCCGCTGGGTTTGGAAGAAATGCCTCTACACTGCAGGTCATGAAAGTGAA
AACTGGGGTCTTGCCACGGTTGAAGAATTCATGCCGGTTCCTCAACTTTGTCGCCTTATC
CTAGCTGTTTATGAAGATGATCTTCGCAATCCAATCTGGGAACCCCCTGGGGGTTATAGA
ATCAATCCAGATTGGGTTATCTTACGAAAAAACTATGAAGAAACTCAATGCCGTGTGCCT
CCTTACTTAATATACCTTGATCATAAGAATACTGATATAGTTTTGGCAATTAGGGGGCTT
AACCTAGCAAAAGAAGGTGATTATGCAATTTTGCTTGATAACAAACTTGGGCAGACAAAG
TTTGATGGTGGATATGTTCACAATGGGTTATTGAAGGCTGCAAGGTGGGTTTTCGATGCC
GAGTGTGAGTTTTTGAGGGGGTTGGTTGAGAGGAACCCAGATTATACTTTGACATTTGCT
GGGCATTCACTGGGGGCAGGGGTGGTGGCATCGTTGGTGTTGATTGTGGTTCAGAATCTG
GACAAGTTGGGGAACATTGAGAGGAACAAAATCAGATGCTTTGCTATTGCACCTACTAGG
TGTATGTCACTGAATTTGGCGGTGAGATATGCAGATGTCATCAATTCTGTTGTGCTTCAG
GATGATTTCTTACCTCGAACAACAATGGCACTGGAAGATGTTTTCAAATCACTTATCTGT
TTGCCATGTTTGCTCTGCCTTATGTGCCTGAAAGATACATGCACTCTGGAGGAGAAGATG
CTTAAAGATCCAAGACGGCTATATGCTCCTGGTCGGCTATACCACATTGTCGAGCGGAAG
CCCTTAAGGATAGGAAGATTTCCTCCCGTTGTGAGGACTGCAGTTCCAGTAGATGGCAGG
TTTGAGCACTTAGTTCTTTCCTGCAATTTAACTGCTGACCATGCTATCATTTGGATAGAA
AGAGAATCTGAAAAGGCCCTTGATTTGATGCTAGAGAAAGATAGGATCATGGAGATTCCA
GCTAAACAGAGGATGGAGCGTCAGGAGTCACTTGCTCGAGAGCACAGTGTGGAGTACAAG
GCAGCTCTTCAGAGGGCTGCTGCTTTGGATATTCCACTAGCTTATTCACCTTCTCAGTAT
GGCACATTCCGTGAAATGCAAGAAGGGGAAACTTCTAGCAGATCATGTGAGCAAACTTCT
TTGTTGTCATCTAAGGGAAGGAGGGAAAGTTGGGATGAATTTGTAGAACGTTTTTTCGAT
GTTAATGAGTCCGGCGAAATGGTGTTCAAGAAGCCTGTCTCATAACGCCAGCAAAATTCA
TGTTGTAAATAGCTAACCAAAATCATATTTTTTATTCATATCAAATACCCCGTTGTTGGG
GATTTCGTGTGTCTCATGCCTTACCGGTAGCATGACTGTGCACGAAAGTTCAATTTTATC
AAAGGCGCTTTAACGTGCAGACACCTATTTGATGCTCGATTGGCCAAAAATTTTAGCCAT
A