Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00310.2
CDS Infomation

gene=orange1.1t00310
Sequence

ATGAATGTCATGCGCCGTCTCAAGAGCATTGCTTCTGGTCGCACTTCTATTTCTTCTGAT
CCGGGTGGAGATTCTGGCATAAAGAGGGCAAAGGTCGATAAAGAATTAGAGGTAAATGGG
GAAGCAAATTTGGTTGAAAGAAGTGCCTCCAGTCTAGAGCAGCATATGGCTTCTACATCT
CTGGAGCCTGTTGCAAGCACGTCCGAAGCAGCCACAGTTGCTAGAACTGAAAGATCAGGT
TTTGATCAACTGCCTAAGGAAATGAATGAGATGAGAATAAGAGATGAAAAAAATGTTAAC
CATGATGATAAGGATTTGGAACCCTCAATTGTCAATGGCAATGGAACAGAAGCAGGTCAA
GTCATTGCTACTACAGTAGGTGGTCGAAATGGACAACCAAAGCAGACAATCTCCTATATG
GCAGAACGTGTGGTGGGGACTGGTTCCTTTGGTGTTGTCTTCCAAGCTAAGTGCCTTGAA
ACAGGGGACTCTGTTGCAATAAAGAAGGTGCTCCAGGATAAGAGATACAAGAATAGGGAA
CTCCAAATTATGCGTTTACTTAACCATCCTAATGTTGTTTCTCTGAAACATTGTTTCTTT
TCAACTACTGAGAAAGATGAGCTTTATCTTAACCTTGTCTTGGAGTATATATCTGAAACT
GTCTACCGAGTTTCAAAGCACTATACCAGAATGAACCAACATGTGCCCATTCTTTACGTG
CAGCTGTATACATACCAGATTTGCCGTGCACTGAATTACTTGCATCATGTTGTTGGGGTG
TGTCATCGAGACATTAAGCCACAAAATTTATTGGTCAATCCCCATACACACCAGTTAAAG
ATATGTGACTTTGGAAGTGCAAAGATGTTGGTGCCAGGTGAACCCAACATATCGTATATC
TGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGGGGCTACAGAATACACAACTGCC
ATTGATATGTGGTCCATTGGATGTGTCTTGGCTGAGCTTCTTCTTGGACAGCCTTTATTT
CCTGGGGAAAGTGGAGTTGACCAGCTCGTCGAAATCATTAAGATTCTGGGAACACCAACA
AGAGAAGAAATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAAATTAAA
GCTCATCCATGGCATAAGATATTTCACAAACGAATGCCCCCTGAAGCACTGGATCTTGTC
TCAAGGTTGCTTCAGTATTCACCAAGCCTACGATGCACTGCTTTGGAGGCATGTGCACAC
CCCTTCTTTGATGATTTGAGAGACCCCAATACTTGTTTGCCAAATGGGCGACCCCTACCT
ACTCTTTTCAATTTCACTGCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGACAACGT
CTTATCCCGGAGCACGCAAGGAAATGA

Peptide Sequence

PEP ID

orange1.1t00310.2
PEP Infomation
Sequence

MNVMRRLKSIASGRTSISSDPGGDSGIKRAKVDKELEVNGEANLVERSASSLEQHMASTS
LEPVASTSEAATVARTERSGFDQLPKEMNEMRIRDEKNVNHDDKDLEPSIVNGNGTEAGQ
VIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRE
LQIMRLLNHPNVVSLKHCFFSTTEKDELYLNLVLEYISETVYRVSKHYTRMNQHVPILYV
QLYTYQICRALNYLHHVVGVCHRDIKPQNLLVNPHTHQLKICDFGSAKMLVPGEPNISYI
CSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPT
REEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAH
PFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHARK*

Transcript Sequence

Transcript ID

orange1.1t00310.2
Transcript Infomation

gene=orange1.1t00310 CDS=348-1754
Sequence

GTTGAAAATCCTTGTTTGACTGAAGTACAAAACATGAGGCTGGAATGATTGGCTTTTCTT
TGATCGAGCTTTGACCGCGGAAAAGAAAATCAAAACCAAAGAGACACCTGGAGGCTTTCT
AGAGGGAGAGCGTCAGCGAAAATTAAGAGAGAAAAGAGAGAGGGGAGGGATTTTGATTTT
TGTGTTTGTATTTTCTGTTTTTTAATTTCCTTTTGGGTCGCCGAGGAAGAGAGAGAAATT
CTCTCTCTCCTTTTGAAGCAATACCGTTCTTTTGAATTTGGCGTTGGATTTGTTCATTCT
TTCATTTTTGAAGTGGAGAATCAATTAGGGTTTCGTTTTCAGAAACAATGAATGTCATGC
GCCGTCTCAAGAGCATTGCTTCTGGTCGCACTTCTATTTCTTCTGATCCGGGTGGAGATT
CTGGCATAAAGAGGGCAAAGGTCGATAAAGAATTAGAGGTAAATGGGGAAGCAAATTTGG
TTGAAAGAAGTGCCTCCAGTCTAGAGCAGCATATGGCTTCTACATCTCTGGAGCCTGTTG
CAAGCACGTCCGAAGCAGCCACAGTTGCTAGAACTGAAAGATCAGGTTTTGATCAACTGC
CTAAGGAAATGAATGAGATGAGAATAAGAGATGAAAAAAATGTTAACCATGATGATAAGG
ATTTGGAACCCTCAATTGTCAATGGCAATGGAACAGAAGCAGGTCAAGTCATTGCTACTA
CAGTAGGTGGTCGAAATGGACAACCAAAGCAGACAATCTCCTATATGGCAGAACGTGTGG
TGGGGACTGGTTCCTTTGGTGTTGTCTTCCAAGCTAAGTGCCTTGAAACAGGGGACTCTG
TTGCAATAAAGAAGGTGCTCCAGGATAAGAGATACAAGAATAGGGAACTCCAAATTATGC
GTTTACTTAACCATCCTAATGTTGTTTCTCTGAAACATTGTTTCTTTTCAACTACTGAGA
AAGATGAGCTTTATCTTAACCTTGTCTTGGAGTATATATCTGAAACTGTCTACCGAGTTT
CAAAGCACTATACCAGAATGAACCAACATGTGCCCATTCTTTACGTGCAGCTGTATACAT
ACCAGATTTGCCGTGCACTGAATTACTTGCATCATGTTGTTGGGGTGTGTCATCGAGACA
TTAAGCCACAAAATTTATTGGTCAATCCCCATACACACCAGTTAAAGATATGTGACTTTG
GAAGTGCAAAGATGTTGGTGCCAGGTGAACCCAACATATCGTATATCTGCTCAAGATATT
ACAGGGCCCCGGAACTTATATTTGGGGCTACAGAATACACAACTGCCATTGATATGTGGT
CCATTGGATGTGTCTTGGCTGAGCTTCTTCTTGGACAGCCTTTATTTCCTGGGGAAAGTG
GAGTTGACCAGCTCGTCGAAATCATTAAGATTCTGGGAACACCAACAAGAGAAGAAATTA
AGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAAATTAAAGCTCATCCATGGC
ATAAGATATTTCACAAACGAATGCCCCCTGAAGCACTGGATCTTGTCTCAAGGTTGCTTC
AGTATTCACCAAGCCTACGATGCACTGCTTTGGAGGCATGTGCACACCCCTTCTTTGATG
ATTTGAGAGACCCCAATACTTGTTTGCCAAATGGGCGACCCCTACCTACTCTTTTCAATT
TCACTGCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGACAACGTCTTATCCCGGAGC
ACGCAAGGAAATGATTTGATGACTGAGATGGATCCATATGCAATATAAATCAATTTTTGG
ATGCTTAGGTATGCCACAAGCCATTGTGCCCTACAGGGCAACCGATTTTTTTCCCTTCAC
CAATGAGTTGGTTCGTGGCTGGGAGGCTGCTCAAGGATTTTTATGATGAATCTGCTGATG
GGAGTGAGTTGTGGATGGAAGAAGGTTTGACATTTATTTTCTAATTAGCAATGTTTAATT
TGTTTTATGTCTCAATTATGAAAGCTTGAGTTATTCCAGATATGTCTGTCATATATTGTT
TACAATTATTCGTTGTGGAAAACTAACTTGACATTATCAAGTTGATGAATTAGGATGGCG
TTCTTGGTGTATAATTCTCTCGTTCTTTTCTCACGTTACTGAAATTCATCGTCTATAATC
CATCGTCTTGTTTCCTTGTGATTGCTGCTCTTACTTTTTGGACAAGTTGTGACCTTTCAT
TTCAA