Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00305.1
CDS Infomation

gene=orange1.1t00305
Sequence

ATGGCTAATACGGCTGGTTCAACGAGACTATCTTACATAACATTCAAAACAAAGCATGCA
AATCTTTATTCAATAACCCTCGTTACAATTCTCTGCACAATCTTTTACCTCGCGGGCATG
TGGCAGCACTCGCCGGGGGCCATCCGCGCTGCCACGTCACCTTCTTCTATACTCACTTCT
GTCCCATGCAGCAGCACATCGGCCAAGGCCTCAACAAACCTCAACCTCGACTTCTCAGCC
CACCACCAGGCTCCTGACCCCCCTCCCACTTTGGCGCGTGTCACCTACATCCCTCCCTGC
GACCCCAAATACGTCGAGAACGTCCCCTGCGAGGACACTCACCGGTCATTGAAATTCGAC
AGGGACAGGTTGATATACAGGGAGAGGCACTGCCCTGAGAAAACCGAGTTGCTCAAGTGT
CGCGTGCCGGCGCCGCACGGTTACACGGTGCCGTTTAGGTGGCCGGAGAGCAGGCAGTTT
GCGTGGTACGCTAATGTGCCGCATAAGGAGTTGACAGTAGAGAAGAAGAACCAGAATTGG
GTCCGGTTCCAGGGTGACCGGTTCAGTTTTCCAGGTGGCGGCACGATGTTCCCACGCGGC
GCTGACGCGTACATTGACGATATTGGCAAGTTGATTAATCTCAAAGATGGCTCTATAAGG
ACCGCCATTGATACTGGTTGTGGGGTTGCTAGCTGGGGAGCTTACCTTATGTCAAGAAAT
ATTCTGGCAGTATCATTTGCACCAAGAGACACTCATGAAGCTCAGGTACAATTTGCTTTA
GAGCGAGGAGTTCCAGCATTGATTGGAGTCATGGCTTCGATCAGGCTTCCTTATCCTTCA
AGAGCTTTTGACATGGCACATTGCTCTCGTTGTCTCATTCCTTGGGGCCAATATGATGGT
CTATATTTAATTGAAGTTGATCGAGTTTTACGCCCTGGTGGGTATTGGATTCTGTCTGGG
CCACCAGTGAACTGGGAGAGCCACTGGAAAGGCTGGAATAGAACAACTGAAGACTTAAAA
TCAGAACAAAATGGGATAGAGACCATAGCAAGGAGCCTATGCTGGAAAAAGTTAATTCAA
AAGAAAGATCTCGCTATTTGGCAGAAACCCACTAATCATGTACATTGTATAGCTAACCGA
AGAGTCTTCAAAAAGCCTCGCTTTTGCAAGGCACAAGATCCTGACATGGCGTGGTATACT
AAGATGGAGACTTGCTTGACCCCACTGCCTGAGGTGTCCAATATAAAGGAAATCGCCGGG
GGGCAATTGACCAAGTGGCCAGAGAGGTTGAATGCAATCCCTCCCAGGGTTAATAGGGGA
GCAGTGGATGGAGTTACAGCAGAGATGTTTAGAGAAGACACAGCCCTATGGAAGAAAAGA
GTGACATATTACAAATCCGTGGACTATCAACTAGCACAACCTGGGAGATACCGCAACTTG
CTTGATATGAATGCTTATTTGGGAGGCTTTGCAGCAGCTCTCGTTGATGATCCATTGTGG
GTCATGAACACTGTCCCAGTTGAAGCCAAAATCAACACCCTTGGAGTTATCTACGAACGT
GGTTTGATTGGAACCTATCAGAATTGGTGCGAGGCCATGTCTACTTATCCGAGAACTTAT
GATCTCATCCATGCTGATTCAATTTTCAGTCTTTATAAGGACAGATGTGAAATGGAAGAT
GTCTTGTTAGAAATGGATAGGATCTTGCGGCCAGAAGGTAGTGTAATTATCCGGGACGAT
GTAGATATATTGGTGAAGATTAAGAGTATCACAGATGGCATGGAATGGGAAGGAAGAATT
GCAGACCATGAAAATGGACCCCGTCAGAGAGAGAAGATTCTTTTTGCAAATAAAAAATAT
TGGACCGCACCAGCCCCCGATCAAAATCAAGGAACACATACAGCTCGATAA

Peptide Sequence

PEP ID

orange1.1t00305.1
PEP Infomation
Sequence

MANTAGSTRLSYITFKTKHANLYSITLVTILCTIFYLAGMWQHSPGAIRAATSPSSILTS
VPCSSTSAKASTNLNLDFSAHHQAPDPPPTLARVTYIPPCDPKYVENVPCEDTHRSLKFD
RDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNW
VRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN
ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG
LYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ
KKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAG
GQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNL
LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTY
DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRI
ADHENGPRQREKILFANKKYWTAPAPDQNQGTHTAR*

Transcript Sequence

Transcript ID

orange1.1t00305.1
Transcript Infomation

gene=orange1.1t00305 CDS=696-2606
Sequence

TTTTTAATTTTATAGAAAACACACCATGTGATTCTATAAAGTGCCCCACGTCTTTTGATT
TTGTATAAGCATACAGCAGATGATGCGCATTGTGATGTGCCATGCATGATGCATGTCCAA
TATCTCCCACGTCCCTCTTTCCCTTACTACTGGTCAAATGAAACAATTCCAATAATATAT
GTTTTGTTTATTATTTTGAACGTAACGTTCTATCCACGAAAATTAAATAAATAAATTCAA
TTCGCATTTTATTAGAATTATTATTTCGAATACCATAACCAGAGAACATCTTAGATTGAT
ATTCCTTAATTGCATGCAAAATTACAATTTTGTTAAATACACAAAACAAAGAATGGCGAG
TGGAGACGAAGAACAGAGAATCTGCCTCTTTATTCACTTGCCTTATTAATAATATGCCCG
CGCGCGCGCCCACGTTCCATAAATGCAAACACGCTCTCTCGTTGGGCCAGTTTCATCTTT
CACCAGCGCGTCACCCTCACTCGATATCACCAGTCCGCGTACCAAACAAAACCTTGAGGA
GTTCACCCGTCACCCTTACGTTAACCCGTCTTCCTTGACTACAGAGACTCTCGCATAAAA
GCAATACGGAGACTCTCATTTTCATTCATAATTCATCGGTCTCTCTTAAATTTTTTTTTT
TATTTTTTTTTATTTTTATTTTGGTTTCAATTTCAATGGCTAATACGGCTGGTTCAACGA
GACTATCTTACATAACATTCAAAACAAAGCATGCAAATCTTTATTCAATAACCCTCGTTA
CAATTCTCTGCACAATCTTTTACCTCGCGGGCATGTGGCAGCACTCGCCGGGGGCCATCC
GCGCTGCCACGTCACCTTCTTCTATACTCACTTCTGTCCCATGCAGCAGCACATCGGCCA
AGGCCTCAACAAACCTCAACCTCGACTTCTCAGCCCACCACCAGGCTCCTGACCCCCCTC
CCACTTTGGCGCGTGTCACCTACATCCCTCCCTGCGACCCCAAATACGTCGAGAACGTCC
CCTGCGAGGACACTCACCGGTCATTGAAATTCGACAGGGACAGGTTGATATACAGGGAGA
GGCACTGCCCTGAGAAAACCGAGTTGCTCAAGTGTCGCGTGCCGGCGCCGCACGGTTACA
CGGTGCCGTTTAGGTGGCCGGAGAGCAGGCAGTTTGCGTGGTACGCTAATGTGCCGCATA
AGGAGTTGACAGTAGAGAAGAAGAACCAGAATTGGGTCCGGTTCCAGGGTGACCGGTTCA
GTTTTCCAGGTGGCGGCACGATGTTCCCACGCGGCGCTGACGCGTACATTGACGATATTG
GCAAGTTGATTAATCTCAAAGATGGCTCTATAAGGACCGCCATTGATACTGGTTGTGGGG
TTGCTAGCTGGGGAGCTTACCTTATGTCAAGAAATATTCTGGCAGTATCATTTGCACCAA
GAGACACTCATGAAGCTCAGGTACAATTTGCTTTAGAGCGAGGAGTTCCAGCATTGATTG
GAGTCATGGCTTCGATCAGGCTTCCTTATCCTTCAAGAGCTTTTGACATGGCACATTGCT
CTCGTTGTCTCATTCCTTGGGGCCAATATGATGGTCTATATTTAATTGAAGTTGATCGAG
TTTTACGCCCTGGTGGGTATTGGATTCTGTCTGGGCCACCAGTGAACTGGGAGAGCCACT
GGAAAGGCTGGAATAGAACAACTGAAGACTTAAAATCAGAACAAAATGGGATAGAGACCA
TAGCAAGGAGCCTATGCTGGAAAAAGTTAATTCAAAAGAAAGATCTCGCTATTTGGCAGA
AACCCACTAATCATGTACATTGTATAGCTAACCGAAGAGTCTTCAAAAAGCCTCGCTTTT
GCAAGGCACAAGATCCTGACATGGCGTGGTATACTAAGATGGAGACTTGCTTGACCCCAC
TGCCTGAGGTGTCCAATATAAAGGAAATCGCCGGGGGGCAATTGACCAAGTGGCCAGAGA
GGTTGAATGCAATCCCTCCCAGGGTTAATAGGGGAGCAGTGGATGGAGTTACAGCAGAGA
TGTTTAGAGAAGACACAGCCCTATGGAAGAAAAGAGTGACATATTACAAATCCGTGGACT
ATCAACTAGCACAACCTGGGAGATACCGCAACTTGCTTGATATGAATGCTTATTTGGGAG
GCTTTGCAGCAGCTCTCGTTGATGATCCATTGTGGGTCATGAACACTGTCCCAGTTGAAG
CCAAAATCAACACCCTTGGAGTTATCTACGAACGTGGTTTGATTGGAACCTATCAGAATT
GGTGCGAGGCCATGTCTACTTATCCGAGAACTTATGATCTCATCCATGCTGATTCAATTT
TCAGTCTTTATAAGGACAGATGTGAAATGGAAGATGTCTTGTTAGAAATGGATAGGATCT
TGCGGCCAGAAGGTAGTGTAATTATCCGGGACGATGTAGATATATTGGTGAAGATTAAGA
GTATCACAGATGGCATGGAATGGGAAGGAAGAATTGCAGACCATGAAAATGGACCCCGTC
AGAGAGAGAAGATTCTTTTTGCAAATAAAAAATATTGGACCGCACCAGCCCCCGATCAAA
ATCAAGGAACACATACAGCTCGATAAAAATGCTCTTCTTCCAAAATTTATTTTATTTATT
TATTTTTCAAGATTTTTGTATTTACATCCATCAAGGCATTTGTTTCCCTCCTAAAATATC
TTCAGGAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTTTTTGATGTTG
TGCAATGAATCCATCAACATCCTTTTTATCAACATAACCCTTTTCTTGGTATCTTTTAGT
AATTTTGTGCTTATTCTTATGAACCAATGCAATACCTACGATTTGATATAGAAAAAAAAT
AAAATGACGGGGTTCGATAATAAGCATACCCCCTTTCGTCAATTCTTTAAGAGCGAAATT
CTTCTTAGTGATTAAAATAGGCGGACTAATTTCTCCCCCCTTGAACTTGAATAGAGGCTA
TGGTAACGTCGCTAGGATTTATTAGTCCAACCAGGTGACAATATTCTTTCATATCATTAT
GTGATGACCACAGAATCGATTTATTGATTTCATCAAATTAGATAAATAAGAAATTAATAT
AAGTTCAAAACCTCGGTTATAAGCATTCTTGTACTCCCATTAAACCTGTGTGCAAGCAGA
GACAAGCTCGGAGGTTAAAGAGATTAAAGGCATAAAGGACCGATTAGAACTTTTGTTACC
TTCAACTTGGAAGGTAGCAAAACCGCTTCGAGCCCAAGGCTACGGCTTCTCTATTTTCAG
CTGCAGCTTTCGGGTAATGAACAAATGAATACCATAAAACCTAAGTACCTCAATTCACTA
TCCTAGACATGCAGTCTGAACAATAGAACAAGAGACTTTGAGAATGGCCTCTTCCCCCTT
CGGGGATCTTCAGTGTAGTACATGCAAATGAAAAACATAAGAGGTCACTTCTTATTCTTG
TTAGCAAGCAGAAGGGCCTAATTTGAGCTTCTAAGGGGAAAGACAGTATTATATAATTCC
TTTCCTTGTGCATCCTAAAAAGGTTGAATAAATTGTAGTGCTCAAACAGAGTATTTACTA
CGAGCTCGCCAGAGCAATAGAACCTAATTGGCATTTACACTGTGATGTTCAAAGAGTGAG
AGCGCTAAATGAACTCCAGAAATAAGGCTTCCTGTTTGCTTGTCAGGCCAAGTTCATTCA
AACTCGAGGATCCATCAGAAACACCAAAAGCACGCCGAGGATATGGCCTCACCTGTTC