Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00279.2
CDS Infomation

gene=orange1.1t00279
Sequence

ATGGCGGACCATCATCGTGACCATGATCATGATCTCTCTTCACCTCTCCTCCAATCTCCT
CGCTCCGATCATTCCCCCGTAATCATCTCCATCGAAGCTGACGGCAACGACACCGTTTCC
GACCCAGCAACTCAAGATCAACTGAACAATCACGATACCCGCTACCATAATAATCCTGGC
AACCCCTATTGGTTTATTGGCTCTGACGGGTTGTCTGTACCGGGGCCAAACACGGCTAAT
CCTTTTCTAAACGACACCCCGCATGTCGTTGGGGTTTATGAGTTTGTCAAGATTGTGGTG
TGCTTTCCAATTGTTTTGATTAGGCTCGTGTTGTTTGGGTTTTGTTTGTTGGTGGGGTAC
TTAGCAACCAAGCTGGCTTTGGAGGGATGGAAGGATAAGCAGAATCCGATGCCAGTATGG
CGGAGTCGCCTTATGTGGGTCACTAGGGTTTGTTCCCGCTGTATTTTGTTCTCTTTTGGC
TATCATTGGATAAGACGGAAAGGAAAACCTGCTCCAAGACAGATTGCTCCTATAGTTGTA
TCTAATCACATATCATATATCGAACCTATTTTCTTTTTCTACGAATTATTCCCCACGATT
GTTGCATCAGAGTCCCATGATTCCATTCCGTTTGTCGGAACTATCATCAGAGCAATGCAG
GTGATATATGTAGATAGGTTCTCACAATCATCAAGGAAGAATGCTGTTAGTGAAATAAAG
AGAAAGGCTTCTTGCGATAGATTTCCTCGTGTTCTATTATTTCCTGAGGGAACAACGACT
AATGGAAAATTTCTCATTTCCTTCCAACTCGGTGCATTCATCCCTGCTTACCCCATTCAA
CCTGTCATTGTTCGCTATCCCCATGTGCACTTTGACCAATCTTGGTATGATGTTCCTTCT
TTCTTTGATTCCTTTTTTCACCGTATGTTGGGCCTTATTTTTTGGCATGCCATCTTGCTC
AGGGGGGATGTTTCTTTGGGAAAGCTCATGTTTAGAATGTTCACACAGTTTCACAATTTC
ATGGAGGTAGAGTACCTTCCTGTTGTTTTTCCAAGCGATAACCAAAAAGAAAATGCTCTC
CGTTTTGCTGAGAGGACCAGCCATGCTATGGCATCTGCTCTCAATGCTGTACAAACATCT
CATGCCTATGGAGACTTAATGCTTCTCATGAAAGCATCTGAGCTAAAGGAAGAAAACGCC
TCAAGCTATATGGTTGAAATGGCTAGGGTTGGATCTATATTTCATATAAGCAGCTTGGAA
GCCGTCAACTTTCTGGAAAAGTTTCTGTCTATGAACCCCGACCCTAGTGGCTGTGTTAAA
CTTCTTGACTTCTTGAGTGTTCTGAGGCTCAAGACTTGTCCTCTTTCTGATGAGATATTT
GGGTTCATTGATGTAGATAAGAATGGGTCAATCACGTTTAAGCAGGTAATCTCCCCTTCT
TACCCTCCCAAGCATTTTCATTGA

Peptide Sequence

PEP ID

orange1.1t00279.2
PEP Infomation
Sequence

MADHHRDHDHDLSSPLLQSPRSDHSPVIISIEADGNDTVSDPATQDQLNNHDTRYHNNPG
NPYWFIGSDGLSVPGPNTANPFLNDTPHVVGVYEFVKIVVCFPIVLIRLVLFGFCLLVGY
LATKLALEGWKDKQNPMPVWRSRLMWVTRVCSRCILFSFGYHWIRRKGKPAPRQIAPIVV
SNHISYIEPIFFFYELFPTIVASESHDSIPFVGTIIRAMQVIYVDRFSQSSRKNAVSEIK
RKASCDRFPRVLLFPEGTTTNGKFLISFQLGAFIPAYPIQPVIVRYPHVHFDQSWYDVPS
FFDSFFHRMLGLIFWHAILLRGDVSLGKLMFRMFTQFHNFMEVEYLPVVFPSDNQKENAL
RFAERTSHAMASALNAVQTSHAYGDLMLLMKASELKEENASSYMVEMARVGSIFHISSLE
AVNFLEKFLSMNPDPSGCVKLLDFLSVLRLKTCPLSDEIFGFIDVDKNGSITFKQVISPS
YPPKHFH*

Transcript Sequence

Transcript ID

orange1.1t00279.2
Transcript Infomation

gene=orange1.1t00279 CDS=124-1587
Sequence

CCAAGTAAAGTTTTACATTTACAGGACGACAGCACTCATCCTCTCTCTCCGTGTTTGTTT
TCTCTGTCTGTCACATTGAAATTCAAGGCTCCAGCTTCTCCACCCCCCACCCAACAAACA
ACAATGGCGGACCATCATCGTGACCATGATCATGATCTCTCTTCACCTCTCCTCCAATCT
CCTCGCTCCGATCATTCCCCCGTAATCATCTCCATCGAAGCTGACGGCAACGACACCGTT
TCCGACCCAGCAACTCAAGATCAACTGAACAATCACGATACCCGCTACCATAATAATCCT
GGCAACCCCTATTGGTTTATTGGCTCTGACGGGTTGTCTGTACCGGGGCCAAACACGGCT
AATCCTTTTCTAAACGACACCCCGCATGTCGTTGGGGTTTATGAGTTTGTCAAGATTGTG
GTGTGCTTTCCAATTGTTTTGATTAGGCTCGTGTTGTTTGGGTTTTGTTTGTTGGTGGGG
TACTTAGCAACCAAGCTGGCTTTGGAGGGATGGAAGGATAAGCAGAATCCGATGCCAGTA
TGGCGGAGTCGCCTTATGTGGGTCACTAGGGTTTGTTCCCGCTGTATTTTGTTCTCTTTT
GGCTATCATTGGATAAGACGGAAAGGAAAACCTGCTCCAAGACAGATTGCTCCTATAGTT
GTATCTAATCACATATCATATATCGAACCTATTTTCTTTTTCTACGAATTATTCCCCACG
ATTGTTGCATCAGAGTCCCATGATTCCATTCCGTTTGTCGGAACTATCATCAGAGCAATG
CAGGTGATATATGTAGATAGGTTCTCACAATCATCAAGGAAGAATGCTGTTAGTGAAATA
AAGAGAAAGGCTTCTTGCGATAGATTTCCTCGTGTTCTATTATTTCCTGAGGGAACAACG
ACTAATGGAAAATTTCTCATTTCCTTCCAACTCGGTGCATTCATCCCTGCTTACCCCATT
CAACCTGTCATTGTTCGCTATCCCCATGTGCACTTTGACCAATCTTGGTATGATGTTCCT
TCTTTCTTTGATTCCTTTTTTCACCGTATGTTGGGCCTTATTTTTTGGCATGCCATCTTG
CTCAGGGGGGATGTTTCTTTGGGAAAGCTCATGTTTAGAATGTTCACACAGTTTCACAAT
TTCATGGAGGTAGAGTACCTTCCTGTTGTTTTTCCAAGCGATAACCAAAAAGAAAATGCT
CTCCGTTTTGCTGAGAGGACCAGCCATGCTATGGCATCTGCTCTCAATGCTGTACAAACA
TCTCATGCCTATGGAGACTTAATGCTTCTCATGAAAGCATCTGAGCTAAAGGAAGAAAAC
GCCTCAAGCTATATGGTTGAAATGGCTAGGGTTGGATCTATATTTCATATAAGCAGCTTG
GAAGCCGTCAACTTTCTGGAAAAGTTTCTGTCTATGAACCCCGACCCTAGTGGCTGTGTT
AAACTTCTTGACTTCTTGAGTGTTCTGAGGCTCAAGACTTGTCCTCTTTCTGATGAGATA
TTTGGGTTCATTGATGTAGATAAGAATGGGTCAATCACGTTTAAGCAGGTAATCTCCCCT
TCTTACCCTCCCAAGCATTTTCATTGACATTTGCACCCAACTTTATGTTCTCCAAAGGAA
TTTTAGCCATGATCAAGACCAAGTTTTATTGAACTATGGATACCAAATTTTAGCAAAATT
TCTTCCCATC