Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00257.1
CDS Infomation

gene=orange1.1t00257
Sequence

ATGAGTTTCATCAAAGATATCATCGACTCTCTCGGCTCAATTTTCTCCAACGACAGCTCC
CCTTTTGAATCCGAACGAAACCCTAGCTCTTCGACGATGGACGGCGTAGCTGGAACTTCA
ATTACGAACGAACGAACCGCATATAAGCTCAAAGGATACTTTGAATTGGCCAAAGAAGAG
ATAGCCAAGGCCGTTAGGGCTGAAGAATGGGGCTTGGTAGATGATGCCATTATTCATTAC
AAGAACGCACAGCGTATTTTGACCGAAGCTAGTTCCACTCCTGTGCCATCTTATATTAGC
ACTAGTGAACATGAGAAGGTGAAATCATATCGCCAAAAGATATCGAAATGGCAGAGTCAA
GTGTCTGACAGATTACAAGCATTGAATCGGCGAGCGGGTGGCACATCTACGAGCAAGAGC
ACCTCACCGCATGCACAAACTGCTGCAGTTTCATCAACATCAAACTTTAGGAAAAACATT
TCACCTAATTCTCCGCGTTCTAGTAGAAACAATCCAGTGGTGAGGAATCAGACGGAAAAA
ACTGGAAGCTCTAAACCCTTGGCAGAAGCTGGTAATGGTTATGATTCAAAATTGGTTGAA
ATGATAAATACAGCAATAGTGGATAGAAGTCCATCTGTTAAATGGGAAGATGTTGCTGGT
CTTGAGAAAGCAAAGCAAGCGTTAATGGAAATGGTTATTTTGCCAGCTAAAAGAAGAGAT
TTGTTCACTGGCCTCCGAAGACCAGCTAGAGGTCTGCTTCTCTTCGGTCCCCCTGGAAAT
GGGAAGACAATGCTTGCCAAAGCAGTGGCATCGGAGTCACAGGCTACATTTTTCAATGTT
TCTGCGTCTTCCCTAACGTCGAAGTGGGTGGGAGAGGGTGAAAAGCTCGTCCGGACTCTC
TTCATGGTAGCTATATCTAGACAGCCATGTGTAATTTTCATTGATGAAATTGATAGTATA
ATGTCAACAAGGATGGCTAATGAGAATGATGCAAGCAGACGGTTGAAGTCCGAGTTTCTA
ATACAGTTTGATGGAGTGACATCGAATCCTAATGATTTGGTGATTGTCATGGGTGCAACT
AATAAGCCACAAGAATTAGACGATGCAGTTCTTAGGAGATTGGTGAAGAGAATTTACGTT
CCTCTGCCAGATGAAAATGTTAGGAGACTTCTTCTGAAGCACAAACTGAAGGGCCAAGCA
TTTTCCTTACCTGGTGGAGATCTAGAAAGACTTGTGAGGGAGACAGAAGGATATTCTGGA
AGTGATTTACAAGCCTTGTGTGAAGAAGCTGCAATGATGCCGATTAGAGAGCTTGGTACT
AATATTCTTACCGTCAAAGCAAATCAGCTAAGACCACTTAGGTATGAAGACTTTCAGAAG
GCAATGGCCGTCATTAGACCGAGCTTAAACAAAAGCAAGTGGGAAGAGCTTGAACAGTGG
AATCGGGAGTTTGGCTCTAACTAA

Peptide Sequence

PEP ID

orange1.1t00257.1
PEP Infomation
Sequence

MSFIKDIIDSLGSIFSNDSSPFESERNPSSSTMDGVAGTSITNERTAYKLKGYFELAKEE
IAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ
VSDRLQALNRRAGGTSTSKSTSPHAQTAAVSSTSNFRKNISPNSPRSSRNNPVVRNQTEK
TGSSKPLAEAGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRD
LFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTL
FMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT
NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG
SDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQW
NREFGSN*

Transcript Sequence

Transcript ID

orange1.1t00257.1
Transcript Infomation

gene=orange1.1t00257 CDS=510-1973
Sequence

CTAAAATCTACGAAAGTAAACAGGCCTGATCACATGCGTTCTTGCTCTTTCCACAAGAAA
TTTAGTCTGACAGCACGTTTTACTTACAGAATCAAGCCACCTATAAAATGAAATGAAAGA
ACTGAAATCTTTTGGATTATATACAAGAGAGACTTACCTTGAAGGGATTGCATCAGGCGA
GACTATTATAACATTCCAGCCCAGTATTTGTATTTAGTCACCGGGTTGAATTATAAGAGG
AAAGGAAATTGCCTCTCAGCTCTCGTGTCGCGCCTGGCGTTGTGTCTTTCATTTGTCACA
AATTTTCAATATTGTCCTTCAACTATTTGAATTTTTCAATCAACAGTCGAGTCGTCACGG
ACTTTAATTTTCACTCCTGGCAACATTTTTCCAACCTCCATATTTAAATTTTTGCTAATT
TGAACTGATTTTCTTAACATTCCGCTAACAATCTCTGCGATGACTTCAGTTTCATCTGAA
GATTCTCTCCCCTGATTTGTAGAAATGACATGAGTTTCATCAAAGATATCATCGACTCTC
TCGGCTCAATTTTCTCCAACGACAGCTCCCCTTTTGAATCCGAACGAAACCCTAGCTCTT
CGACGATGGACGGCGTAGCTGGAACTTCAATTACGAACGAACGAACCGCATATAAGCTCA
AAGGATACTTTGAATTGGCCAAAGAAGAGATAGCCAAGGCCGTTAGGGCTGAAGAATGGG
GCTTGGTAGATGATGCCATTATTCATTACAAGAACGCACAGCGTATTTTGACCGAAGCTA
GTTCCACTCCTGTGCCATCTTATATTAGCACTAGTGAACATGAGAAGGTGAAATCATATC
GCCAAAAGATATCGAAATGGCAGAGTCAAGTGTCTGACAGATTACAAGCATTGAATCGGC
GAGCGGGTGGCACATCTACGAGCAAGAGCACCTCACCGCATGCACAAACTGCTGCAGTTT
CATCAACATCAAACTTTAGGAAAAACATTTCACCTAATTCTCCGCGTTCTAGTAGAAACA
ATCCAGTGGTGAGGAATCAGACGGAAAAAACTGGAAGCTCTAAACCCTTGGCAGAAGCTG
GTAATGGTTATGATTCAAAATTGGTTGAAATGATAAATACAGCAATAGTGGATAGAAGTC
CATCTGTTAAATGGGAAGATGTTGCTGGTCTTGAGAAAGCAAAGCAAGCGTTAATGGAAA
TGGTTATTTTGCCAGCTAAAAGAAGAGATTTGTTCACTGGCCTCCGAAGACCAGCTAGAG
GTCTGCTTCTCTTCGGTCCCCCTGGAAATGGGAAGACAATGCTTGCCAAAGCAGTGGCAT
CGGAGTCACAGGCTACATTTTTCAATGTTTCTGCGTCTTCCCTAACGTCGAAGTGGGTGG
GAGAGGGTGAAAAGCTCGTCCGGACTCTCTTCATGGTAGCTATATCTAGACAGCCATGTG
TAATTTTCATTGATGAAATTGATAGTATAATGTCAACAAGGATGGCTAATGAGAATGATG
CAAGCAGACGGTTGAAGTCCGAGTTTCTAATACAGTTTGATGGAGTGACATCGAATCCTA
ATGATTTGGTGATTGTCATGGGTGCAACTAATAAGCCACAAGAATTAGACGATGCAGTTC
TTAGGAGATTGGTGAAGAGAATTTACGTTCCTCTGCCAGATGAAAATGTTAGGAGACTTC
TTCTGAAGCACAAACTGAAGGGCCAAGCATTTTCCTTACCTGGTGGAGATCTAGAAAGAC
TTGTGAGGGAGACAGAAGGATATTCTGGAAGTGATTTACAAGCCTTGTGTGAAGAAGCTG
CAATGATGCCGATTAGAGAGCTTGGTACTAATATTCTTACCGTCAAAGCAAATCAGCTAA
GACCACTTAGGTATGAAGACTTTCAGAAGGCAATGGCCGTCATTAGACCGAGCTTAAACA
AAAGCAAGTGGGAAGAGCTTGAACAGTGGAATCGGGAGTTTGGCTCTAACTAAATTTCTC
TTATCGCATACCATACATGATATGCTTGAAACCAATGTGTGTCGGCTTCACTGGGAAAAT
TAAACCGGCTCACAACTGGGTAAATGAAAATCCTCTAGTAGTATTACATGCCTGGCCATA
TGAAACTTTGTATGTGTAAATTCTTCATATTCTTTTGCGCGTATGTTGTAATATTTTATG
TAACTAATCTAAAGAACAAAACTTATATGTATTAAAGAAATTTCAAATTGTTTAATTGAT
ACGAGGATAGAATTGAATCTTAAATGTGTTCTAAATCCAAAGTTAGCTTGCAATTGCTTC
CAGTTTGCATGTAA