Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00237.2
CDS Infomation

gene=orange1.1t00237
Sequence

ATGGATCCGGTTCTTTCAATTACGGTGGTCTCGGTGGTTCTTGGAGCTCTGATCGCTATT
ATCTTCTTCAAAAGTTACTTCACTAAGAGAAGATCCGAAATCAAATCCATCGCCAAAACG
GAGCTTGAACCCGATCACCAAAAAAAACCTACTAAGCCTTCTCAACCCATCTCCAAAAAA
TCTCACTCCAAACCTCACTCACACTCTCACGGCGATAAGGATCAAAACAAGCGACATCAT
CCGTTGGATGTTAATACTCTTAAAGGTCATGGTGATTCCGTCACCGGCCTTTGTTTCTCC
TCTGATGGAAAGTGTTTGGCGACAGCTTGTGCTGATGGAGTGATCAGGGTACATAAGTTG
GATGATGCTTCAAGCAAAAGTTTCAAGTTTTTGAGAATCAATTTGCCACCCGGAGGTCCT
CCGACGGCTGTCGCATTTGCTGACAACGCAACTTCCATAGTTGTTGCAACTCATAATCTG
TCTGGCTGTTCATTGTACATGTATGGAGAAGAGAAAGCCATATCTACTAATGAAGGTAAA
CAGCAATCCAAGCTTCCTGGTCCAGAAATCAAATGGGAACATCACAAAGTCCATGACAAA
AGAGCTATCTTGACACTTTTTGGAGCTTCTGCTACTTATGGTACTGCTGATGGAAGCACA
ATCATCGCTTCTTGCTCAGAAGGGACTGATATCAGTATTTGGCATGGAAAAACTGGAAAA
CTTTTGGGTAATGTTGACACAAATCAATTGAAAAACAACATGGCTGCTATATCTCCAAAT
GGGCGTTTTCTTGCTGCTGCTGCTTTCACGGCAGATGTGAAGGTGTGGGAGATTGTATAC
TCAAAGGATGGTTTAGTCAAAGCAGTTACAAGCGTTATGCAGCTTAAAGGGCATAAGAGT
GCAGTTACTTGGTTGTGCTTTGCACCAAACTCAGAGCAGATTATTACAGCCTCAAAGGAT
GGTACACTGCGAGTTTGGAACATCAATGTTCGATATCACCTTGATGAGGATCCAAAGACT
TTGAAGGTGTTACCAATTCCACTTCTGGATTCTAATGGTGCTACATTGCAATATGATCGG
CTTAGTTTATCCTCTGATGGAAAGATATTGGCTGCAACACATGGTTCAACGTTGCAGTGG
CTAAGTGTTGAAACTGGAAAGGTTTTAGACACAGCTGAGAAAGCCCATGAGGGTATGTCC
AGGCATCAAGATTTCACGCTTTATTTAAAAATTTTCCTTACACTTTGTTCTCTATTGCAA
GCGTAA

Peptide Sequence

PEP ID

orange1.1t00237.2
PEP Infomation
Sequence

MDPVLSITVVSVVLGALIAIIFFKSYFTKRRSEIKSIAKTELEPDHQKKPTKPSQPISKK
SHSKPHSHSHGDKDQNKRHHPLDVNTLKGHGDSVTGLCFSSDGKCLATACADGVIRVHKL
DDASSKSFKFLRINLPPGGPPTAVAFADNATSIVVATHNLSGCSLYMYGEEKAISTNEGK
QQSKLPGPEIKWEHHKVHDKRAILTLFGASATYGTADGSTIIASCSEGTDISIWHGKTGK
LLGNVDTNQLKNNMAAISPNGRFLAAAAFTADVKVWEIVYSKDGLVKAVTSVMQLKGHKS
AVTWLCFAPNSEQIITASKDGTLRVWNINVRYHLDEDPKTLKVLPIPLLDSNGATLQYDR
LSLSSDGKILAATHGSTLQWLSVETGKVLDTAEKAHEGMSRHQDFTLYLKIFLTLCSLLQ
A*

Transcript Sequence

Transcript ID

orange1.1t00237.2
Transcript Infomation

gene=orange1.1t00237 CDS=346-1611
Sequence

GCAATTGTTGTTGATAGAAAGCTTCCTTAATGGGCTATGACCTTACATTCAGCCCATAGC
CCTTGAGGATCCATAACATTATACGTCTTACGTCTCCCAACAGTCAATGTGGTACTAAGT
GAGCCCCTCCAAAATCATTTTAAAACCCCTTTCCCAACGACAGCAAGTAGTGCTCTGATA
GTCGTCCAGCATCGGAGGGTAGAACGGACAGACAGTGTCTGGGACTAACCCGCGCCATTA
ACACCCTCTCAGTCTTCTTCGTGAGTCTTATTTCTTAAGAAAAGCAAATTGTGTCAGTGT
CACCATCCATCATCACAAGTTCGATTCTCTGCAGTTACATAGAAAATGGATCCGGTTCTT
TCAATTACGGTGGTCTCGGTGGTTCTTGGAGCTCTGATCGCTATTATCTTCTTCAAAAGT
TACTTCACTAAGAGAAGATCCGAAATCAAATCCATCGCCAAAACGGAGCTTGAACCCGAT
CACCAAAAAAAACCTACTAAGCCTTCTCAACCCATCTCCAAAAAATCTCACTCCAAACCT
CACTCACACTCTCACGGCGATAAGGATCAAAACAAGCGACATCATCCGTTGGATGTTAAT
ACTCTTAAAGGTCATGGTGATTCCGTCACCGGCCTTTGTTTCTCCTCTGATGGAAAGTGT
TTGGCGACAGCTTGTGCTGATGGAGTGATCAGGGTACATAAGTTGGATGATGCTTCAAGC
AAAAGTTTCAAGTTTTTGAGAATCAATTTGCCACCCGGAGGTCCTCCGACGGCTGTCGCA
TTTGCTGACAACGCAACTTCCATAGTTGTTGCAACTCATAATCTGTCTGGCTGTTCATTG
TACATGTATGGAGAAGAGAAAGCCATATCTACTAATGAAGGTAAACAGCAATCCAAGCTT
CCTGGTCCAGAAATCAAATGGGAACATCACAAAGTCCATGACAAAAGAGCTATCTTGACA
CTTTTTGGAGCTTCTGCTACTTATGGTACTGCTGATGGAAGCACAATCATCGCTTCTTGC
TCAGAAGGGACTGATATCAGTATTTGGCATGGAAAAACTGGAAAACTTTTGGGTAATGTT
GACACAAATCAATTGAAAAACAACATGGCTGCTATATCTCCAAATGGGCGTTTTCTTGCT
GCTGCTGCTTTCACGGCAGATGTGAAGGTGTGGGAGATTGTATACTCAAAGGATGGTTTA
GTCAAAGCAGTTACAAGCGTTATGCAGCTTAAAGGGCATAAGAGTGCAGTTACTTGGTTG
TGCTTTGCACCAAACTCAGAGCAGATTATTACAGCCTCAAAGGATGGTACACTGCGAGTT
TGGAACATCAATGTTCGATATCACCTTGATGAGGATCCAAAGACTTTGAAGGTGTTACCA
ATTCCACTTCTGGATTCTAATGGTGCTACATTGCAATATGATCGGCTTAGTTTATCCTCT
GATGGAAAGATATTGGCTGCAACACATGGTTCAACGTTGCAGTGGCTAAGTGTTGAAACT
GGAAAGGTTTTAGACACAGCTGAGAAAGCCCATGAGGGTATGTCCAGGCATCAAGATTTC
ACGCTTTATTTAAAAATTTTCCTTACACTTTGTTCTCTATTGCAAGCGTAATTATTAGTT
TTTAATTATCATCGGTTGCTTTGTCTTAATACAAGTCTACCTTGCAGGTGAGATCACATG
CATGGCTTGGGCACCAAAGACAATTCCAATGGGAAATCAACAAGTCTCGGTTTTAGCAAC
ATCCAGTGTTGACAAGAAAGTGAAGTTGTGGTTGGCGCCATCACTTGAGTCATCATGAAA
GAATCTTTCAGTTTGCTGATAGCAGGCAATGGCAATGAAGGAAGTTTCTTATCTGACAAG
TGGCTGCTATGCCTTTATTGACCCTAAAAGTTTTGAGCACTAAATCCTTCAAGGTTCAAC
AGTTAAGTTTGGTTATTTCTTAGAAATTACATGGTAGAGACCTTCCGCCTCGGAGGTAGA
GCAGGAATGCTTTGTGAGGACAAATTGCGAGAAAAAGATAGTGGTTATATGACTGGCAGA
GATAGATTATACACCAGCAGGAAATCTTATATTTCAGATAGTAATTAACTGTTTCTCTCA
CTTTGCTTTTATTTGCCGTCTACAGTTTTATGTTATTGCCAATTACTTTGGATGTGATTT
CAACCCTTTTGGTGATGAAGCAACCCCTTCTAAAAGGAAGAAGTGATCCATCATTTCTTA
TCTAGGGGTCCATCTCTATCAGTTTGAGCAAAGTTTGGGTTGGATAGAGATCATACGCTC
CCCGGCAATTTTAATAATTTTTAGGACAGGCTCAACATATGTTTTTTATTTTCTAAAGCT
GATGAATAAGTTTTGGGAAATAACAAGTGTACATTAAGATATGAGTTCAAGCAATATCAC