Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00228.2
CDS Infomation

gene=orange1.1t00228
Sequence

ATGTCACAGCTAAAACAAATGTCCCATCTTGATAACATTCCCTCAACTCCTGGCAAATTC
AAGATGGACAAATCCCCATATTTTAACAGACTCCGATTCCATTCTTCTTTAGCAAAGCTC
ACATTTTGGTCCTTCATTTTCTTAGCCGTAATCTTGATTTTCTTCTTTAGATCCCCATCG
TCCAATCCTCTACCCTCTGCCGATCCATCTCGCCGTTCACTTCGCACTTACGACTGGGGT
GGCCCCGCTTTTGAGAAACGGGTCAGGTCGTCGGCCCGGGTCAGGGCCAGAAATGGCATC
TCTGTTTTGGTCACTGGTGCCGCTGGTTTTGTGGGCACCCACGTGTCAGCTGCCCTCAAA
AGGCGCGGTGATGGTGTTCTTGGTCTTGATAATTTCAATGACTATTATGACCCTTCTTTG
AAGAAAGCAAGGCAAGCGCTTTTGGAGCGAAGTGGAATTTTTATCGTTGAAGGTGATATA
AATGACATGGCTCTTTTGAAGAAACTCTTCGATGTCGTGTCTTTTACGCACGTGATGCAT
TTGGCTGCACAAGCTGGTGTGAGGTATGCCATGCAGAATCCTAATTCTTATGTGCACAGT
AACATTGCTGGTCTTGTTAGTTTACTTGAAGTTTGTAAAAATGCGAATCCGCAACCTGCT
ATTGTGTGGGCGAGTTCTAGTTCTGTTTACGGGCTTAATACCAAGGTGCCATTTAGTGAA
AAAGATAGAACTGATCAGCCTGCTAGTTTATATGCTGCTACTAAAAAAGCCGGTGAAGAG
ATTGCACATACTTATAATCACATTTATGGATTATCTTTGACTGGGTTGAGGTTTTTCACT
GTTTATGGACCTTGGGGTAGGCCAGATATGGCATATTTCTTTTTTACCAGGGACATTTTG
AATCGGAAATCGATTCCGATATTTGAGTCTCCTGACCATGGCACGGTTGCTAGGGATTTT
ACCTACATTGATGATATTGTGAAGGGTTGTTTAGCAGCATTGGACACTGCAGAGAAGAGT
ACAGGAAGTGGGGGGAAGAAGAGGGGACGAGCGCAATTGAGGGTTTTCAATTTGGGGAAC
ACTTCTCCTGTACCAGTTTCAGATCTTGTGAGCATTTTGGAGAGGCTTTTGAAGGTTAAG
GCCAAGAGAAATATTATGAAGTTGCCGAGAAATGGTGATGTTCCGTTTACTCATGCGAAT
ATTAGTTTGGCTCAGAGAGAACTGGGGTATAAGCCGACAACAGATCTGCAGACAGGGCTG
AAGAAGTTTGTGCGGTGGTACCTCAGTTACTACGCTGGTGGAAAGAAGGCTGCTGGTTGA

Peptide Sequence

PEP ID

orange1.1t00228.2
PEP Infomation
Sequence

MSQLKQMSHLDNIPSTPGKFKMDKSPYFNRLRFHSSLAKLTFWSFIFLAVILIFFFRSPS
SNPLPSADPSRRSLRTYDWGGPAFEKRVRSSARVRARNGISVLVTGAAGFVGTHVSAALK
RRGDGVLGLDNFNDYYDPSLKKARQALLERSGIFIVEGDINDMALLKKLFDVVSFTHVMH
LAAQAGVRYAMQNPNSYVHSNIAGLVSLLEVCKNANPQPAIVWASSSSVYGLNTKVPFSE
KDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDIL
NRKSIPIFESPDHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGRAQLRVFNLGN
TSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVPFTHANISLAQRELGYKPTTDLQTGL
KKFVRWYLSYYAGGKKAAG*

Transcript Sequence

Transcript ID

orange1.1t00228.2
Transcript Infomation

gene=orange1.1t00228 CDS=373-1692
Sequence

CTCAATTGAAATTGATATTGATATTGAAGTAGCCCCATTTCCATTAATCACAGTTCTATA
ACTCTGGCCTTCCTTGATCTCCATTACCCAAGTTTTAAAATTCTCTCTATAAAAACAAAA
TCAAAACTTGGTCTTTTGAATAACAATAGAACCCAATACAATATAGATCATAGATAGAGC
GAAGCAAAGGAGAGCAAATCAACCCATTCCCCCAGCAAACAAGAAGAAGGTTCCCATTTC
CCATTTTGCTCACAAGGACATGAGAGCTTAAAACAAACAACAAAAAACCCTTTGGCCTTC
ACTATCCTTATCTTCAAAACAAACCCTAACCCTAAAATCAAAAAGAAAAAAAGAAAAAAA
AAAAACTCGCAAATGTCACAGCTAAAACAAATGTCCCATCTTGATAACATTCCCTCAACT
CCTGGCAAATTCAAGATGGACAAATCCCCATATTTTAACAGACTCCGATTCCATTCTTCT
TTAGCAAAGCTCACATTTTGGTCCTTCATTTTCTTAGCCGTAATCTTGATTTTCTTCTTT
AGATCCCCATCGTCCAATCCTCTACCCTCTGCCGATCCATCTCGCCGTTCACTTCGCACT
TACGACTGGGGTGGCCCCGCTTTTGAGAAACGGGTCAGGTCGTCGGCCCGGGTCAGGGCC
AGAAATGGCATCTCTGTTTTGGTCACTGGTGCCGCTGGTTTTGTGGGCACCCACGTGTCA
GCTGCCCTCAAAAGGCGCGGTGATGGTGTTCTTGGTCTTGATAATTTCAATGACTATTAT
GACCCTTCTTTGAAGAAAGCAAGGCAAGCGCTTTTGGAGCGAAGTGGAATTTTTATCGTT
GAAGGTGATATAAATGACATGGCTCTTTTGAAGAAACTCTTCGATGTCGTGTCTTTTACG
CACGTGATGCATTTGGCTGCACAAGCTGGTGTGAGGTATGCCATGCAGAATCCTAATTCT
TATGTGCACAGTAACATTGCTGGTCTTGTTAGTTTACTTGAAGTTTGTAAAAATGCGAAT
CCGCAACCTGCTATTGTGTGGGCGAGTTCTAGTTCTGTTTACGGGCTTAATACCAAGGTG
CCATTTAGTGAAAAAGATAGAACTGATCAGCCTGCTAGTTTATATGCTGCTACTAAAAAA
GCCGGTGAAGAGATTGCACATACTTATAATCACATTTATGGATTATCTTTGACTGGGTTG
AGGTTTTTCACTGTTTATGGACCTTGGGGTAGGCCAGATATGGCATATTTCTTTTTTACC
AGGGACATTTTGAATCGGAAATCGATTCCGATATTTGAGTCTCCTGACCATGGCACGGTT
GCTAGGGATTTTACCTACATTGATGATATTGTGAAGGGTTGTTTAGCAGCATTGGACACT
GCAGAGAAGAGTACAGGAAGTGGGGGGAAGAAGAGGGGACGAGCGCAATTGAGGGTTTTC
AATTTGGGGAACACTTCTCCTGTACCAGTTTCAGATCTTGTGAGCATTTTGGAGAGGCTT
TTGAAGGTTAAGGCCAAGAGAAATATTATGAAGTTGCCGAGAAATGGTGATGTTCCGTTT
ACTCATGCGAATATTAGTTTGGCTCAGAGAGAACTGGGGTATAAGCCGACAACAGATCTG
CAGACAGGGCTGAAGAAGTTTGTGCGGTGGTACCTCAGTTACTACGCTGGTGGAAAGAAG
GCTGCTGGTTGATCTGTTCTTTTGATTGTGTGTTCTACTGCGTTGGAGAAGTTTTTATGG
TTGGTGAACATTATTTGCTGGCCAGTCCCGGGTGTATTAAAGAAAGCCAGAACCTTTGTT
TTTTTTAATTTTTCCCTTTTTTTACCCCTTCTGGAATGTAATTGTTGTAGTTTCAGCATT
GTAGAATTCATGACTCATAGAACATCTGCTGATTGTTGGACATGTATCATTGCCATGCAA
TTCAATAAAAGAGCACACGTACTAGGTAAATTCAATTACATTTAACTGCTTGATTACCTA
ATTCCTTTTATTGGTGTATTAATAATGCCCCTGATTTTCTGAGCTGCTAAATTTTTTACT
GATGATTTTTAGTGACTGTCTTGCCATGAACTGTTAAAATATATGTACTCTAATCATGGA
AGTGCTTACTTTGCCCAACTTACCAATATATCTTGCTGTTATCCATACATGACAAGCTAC
TAAGTTGCAATTTTATTGAACTCTTGTGAATGGATTATCAGATT