Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

orange1.1t00028.2
CDS Infomation

gene=orange1.1t00028
Sequence

ATGGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGAATAATGGG
GTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTGGTGGATAAGATGGAGGAA
GATTCAGAGGAGGTGCAAGCAGTATCCCAGCCTGTTCATCCTGAGCCTAAAGTGAAACAC
AAGGAAGTATCTGCGGTGGAAGATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAG
CGACACTTGAATGTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGC
CAGATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATGAGAAAGAA
GCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATTATGGACACTAATGAAGAG
GAGAGGATCAAGGGTAAAACAGTAGAAGTTGGAAGAGCTCACTTTGAAACTGAGACTACT
AGATTTACAATTTTGGATGCGCCGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGG
GCATCTCAAGCTGATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACT
GGGTTTGAGAAAGGAGGGCAGACCCGTGAACATGTCATGCTTGCAAAAACCTTGGGCGTG
ACTAAACTGCTTCTTGTTGTAAATAAAATGGATGACCACACTGTGAACTGGTCAAAGGAA
AGGTATGATGAGATTGAATCAAAGATGACACCATTTTTAAAGGCTTCGGGCTACAATGTG
AAGAAAGATGTGCAGTTTCTCCCAATATCTGGTTTGATGGGCTTAAACATGAAAACAAGA
GTGGACAAAAGCCTTTGTCCATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGT
ATTGAGATAACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATTC
AAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTACGGGAGGGGGAT
TCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTTCTGGCCATATACTGTGATGAC
AATAGGGTTAGGCATGCAGGACCTGGTGAAAATCTACGGATCAGATTATCTGGAATTGAA
GAGGAAGATATACTATCTGGTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTC
ACTGAATTTATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGCC
GGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGATTGTTGAACTG
CTACATCAAATCGATCTGAAGACGAAGAAACCGATGAAAAAGAAAGTTCTCTTTGTTAAG
AATGGTGCTATTGTTGTTTGCCGTATTCAGGTGAACAATTCGATATGCACTGAAAAGTTT
GCAGATTTTGCGCAGCTGGGAAGGTTCACACTTCGCACTGAAGGGAAAACAGTAGCAGTG
GGTAAGGTGACTGAGCTTCCTACAGTAAGCAGTAGTGCTTAA

Peptide Sequence

PEP ID

orange1.1t00028.2
PEP Infomation
Sequence

MDIEEDIRSLQLDSAEENNGVVNPGDARPEEVEVVDKMEEDSEEVQAVSQPVHPEPKVKH
KEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKE
AKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISG
ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE
RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR
IEITPRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD
NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTA
GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF
ADFAQLGRFTLRTEGKTVAVGKVTELPTVSSSA*

Transcript Sequence

Transcript ID

orange1.1t00028.2
Transcript Infomation

gene=orange1.1t00028 CDS=1-1542
Sequence

ATGGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGAATAATGGG
GTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTGGTGGATAAGATGGAGGAA
GATTCAGAGGAGGTGCAAGCAGTATCCCAGCCTGTTCATCCTGAGCCTAAAGTGAAACAC
AAGGAAGTATCTGCGGTGGAAGATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAG
CGACACTTGAATGTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGC
CAGATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATGAGAAAGAA
GCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATTATGGACACTAATGAAGAG
GAGAGGATCAAGGGTAAAACAGTAGAAGTTGGAAGAGCTCACTTTGAAACTGAGACTACT
AGATTTACAATTTTGGATGCGCCGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGG
GCATCTCAAGCTGATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACT
GGGTTTGAGAAAGGAGGGCAGACCCGTGAACATGTCATGCTTGCAAAAACCTTGGGCGTG
ACTAAACTGCTTCTTGTTGTAAATAAAATGGATGACCACACTGTGAACTGGTCAAAGGAA
AGGTATGATGAGATTGAATCAAAGATGACACCATTTTTAAAGGCTTCGGGCTACAATGTG
AAGAAAGATGTGCAGTTTCTCCCAATATCTGGTTTGATGGGCTTAAACATGAAAACAAGA
GTGGACAAAAGCCTTTGTCCATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGT
ATTGAGATAACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATTC
AAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTACGGGAGGGGGAT
TCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTTCTGGCCATATACTGTGATGAC
AATAGGGTTAGGCATGCAGGACCTGGTGAAAATCTACGGATCAGATTATCTGGAATTGAA
GAGGAAGATATACTATCTGGTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTC
ACTGAATTTATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGCC
GGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGATTGTTGAACTG
CTACATCAAATCGATCTGAAGACGAAGAAACCGATGAAAAAGAAAGTTCTCTTTGTTAAG
AATGGTGCTATTGTTGTTTGCCGTATTCAGGTGAACAATTCGATATGCACTGAAAAGTTT
GCAGATTTTGCGCAGCTGGGAAGGTTCACACTTCGCACTGAAGGGAAAACAGTAGCAGTG
GGTAAGGTGACTGAGCTTCCTACAGTAAGCAGTAGTGCTTAAAACAATTTTGGCATCTAG
AGGTTAGGGTTATTTATATTACTTTGTTGGATTTTCTTTTTCCATACCAAGTTTCTTGAA
CATGTCTGTTATTCTCGTGTTCCACTTTCCTGTCATTT