Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Citrus sinensis

CDS Sequence

CDS ID

Cs1g16340.1
CDS Infomation

gene=Cs1g16340
Sequence

ATGGGCAAGAGAGGGCGAGACAGAAGAGCATCAAACTTGACATCTGTTTCTCATAAACCT
ATCTCACTTAGAGACGAAAAGGCAGGGAAGAAGCTAGTCAACACTACAAACGTCAAGTCA
AAATTGGAACTCGAACACTTGCAAAGACTTGCCGTGTGGGCAAGTAGCGAAACTTCTGTT
CCTTCATTGGCCGCACTTTTTGGACACCGCTTGGCTTCTGCCAATGAGGTCCTGGGATTG
CAACCAGACCCCTCTTTTTTTTCTTGCCAAAGATGCGAGACAGTTCTTCAGCCTGGCTTT
AACTGCACCATTCGAATAGAGAAAAACCAAGTGAAATCAAGACGTAGATGGAAGAAGCCT
AAGACTTCTATGCAGAACACAGTGGTTTATAAGTGCCATTTCTGTTCCCATCACAATCTT
AAGAGAGGGACTCCTGTTGGGCACATGAAAGAGATATGCCCTATGAAGGCAAAACCTTCT
TCAAGACCTCAATGTGGTAGTAAATCGCCACTTAAACGGTCTGCCAACACCACGAAAGAC
ACGAGAAGCAAGGATGAAGTTAGTAAGGTGGACGACGAAGCGTTGCCATCAATATCCAAA
AACTGTGTAGAAACTCCTCCATTGAAAAGTAGAATTACTCTGGAGGGCAAAAAGAGGAGG
AGAAAATCGGGAAATAAAAATTCAGCCGAATCTGAGAGTAATTCGGCCGTAACTGATGAT
AAAACTGTCGGTGTTTCAAGTAGAAGGAGAAGAACATCTTGGACAAGCCTAAAGGAAATT
GCTGAGAGAAAAGAAAATAAAGAACAACAATCATTGAGGCAAAGCAAGGGGAGGCGAATA
AAGCTTCAAGAAGAAGAAAACGACGAACAACTAGAAGAAGAGAGAAAGGTATCGAAGAGG
GAGAGAAGAGATAACGGAAAGGTCAAAGAAGCTGAGAAGCCACTGAACGACGGTGTTAAA
GACAAAGGAGAGGAGGAAGAGCAGCCTGAGGAGCACGCTAAGCTGGTTGGTGAACCGGTT
CGATTTTTCCAGAGGATCCTGTTCTCTTTCACTCCTGAGGATACAAATCAGAAACCTTAT
GCGGCAAGCATTAAGGATATTACTCAGTCCAGAGATGGGAGCATGATGGTTACTGGACGG
TGGTTTTATCACCCTGAAGAAGCTGACAGAAAAGGTGGTGGAAATTGGCTATCCGGTGAT
ACAAGGGAGCTTTTTTACAGTTTTCACCGGGATGAGATTCCAGTAGAATCTGTGATGCAT
AAATGTGTTGTGCATTTTGTTCCCATTCACAAGCACCTCCCAAATCATAAACAACACCCT
GGTTTATCGTTCAAAAGGTTTATGACACTGTGGACCGGAAACTCTGGAAGCTTACTGATA
AAGACTATGAAGATAATAAGCAGCATGAGATTGATCTCCCTAGATCAGAAGACTCGGGTG
CGCTTTGGAGACCTTCCTGACATTGAGCCTCAAGAAACTGCTGCTCAGGAGCAGGAAGAT
CAGTTAAAGGCTAAAAGAATGCTGTGGAAAAAGAACATATCACCTCTTGATGTTTCAAGA
GAGGAAGGTTGCATGACCAGGTGA

Peptide Sequence

PEP ID

Cs1g16340.1
PEP Infomation
Sequence

MGKRGRDRRASNLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSV
PSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKP
KTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTTKD
TRSKDEVSKVDDEALPSISKNCVETPPLKSRITLEGKKRRRKSGNKNSAESESNSAVTDD
KTVGVSSRRRRTSWTSLKEIAERKENKEQQSLRQSKGRRIKLQEEENDEQLEEERKVSKR
ERRDNGKVKEAEKPLNDGVKDKGEEEEQPEEHAKLVGEPVRFFQRILFSFTPEDTNQKPY
AASIKDITQSRDGSMMVTGRWFYHPEEADRKGGGNWLSGDTRELFYSFHRDEIPVESVMH
KCVVHFVPIHKHLPNHKQHPGLSFKRFMTLWTGNSGSLLIKTMKIISSMRLISLDQKTRV
RFGDLPDIEPQETAAQEQEDQLKAKRMLWKKNISPLDVSREEGCMTR*

Transcript Sequence

Transcript ID

Cs1g16340.1
Transcript Infomation

gene=Cs1g16340 CDS=1-1584
Sequence

ATGGGCAAGAGAGGGCGAGACAGAAGAGCATCAAACTTGACATCTGTTTCTCATAAACCT
ATCTCACTTAGAGACGAAAAGGCAGGGAAGAAGCTAGTCAACACTACAAACGTCAAGTCA
AAATTGGAACTCGAACACTTGCAAAGACTTGCCGTGTGGGCAAGTAGCGAAACTTCTGTT
CCTTCATTGGCCGCACTTTTTGGACACCGCTTGGCTTCTGCCAATGAGGTCCTGGGATTG
CAACCAGACCCCTCTTTTTTTTCTTGCCAAAGATGCGAGACAGTTCTTCAGCCTGGCTTT
AACTGCACCATTCGAATAGAGAAAAACCAAGTGAAATCAAGACGTAGATGGAAGAAGCCT
AAGACTTCTATGCAGAACACAGTGGTTTATAAGTGCCATTTCTGTTCCCATCACAATCTT
AAGAGAGGGACTCCTGTTGGGCACATGAAAGAGATATGCCCTATGAAGGCAAAACCTTCT
TCAAGACCTCAATGTGGTAGTAAATCGCCACTTAAACGGTCTGCCAACACCACGAAAGAC
ACGAGAAGCAAGGATGAAGTTAGTAAGGTGGACGACGAAGCGTTGCCATCAATATCCAAA
AACTGTGTAGAAACTCCTCCATTGAAAAGTAGAATTACTCTGGAGGGCAAAAAGAGGAGG
AGAAAATCGGGAAATAAAAATTCAGCCGAATCTGAGAGTAATTCGGCCGTAACTGATGAT
AAAACTGTCGGTGTTTCAAGTAGAAGGAGAAGAACATCTTGGACAAGCCTAAAGGAAATT
GCTGAGAGAAAAGAAAATAAAGAACAACAATCATTGAGGCAAAGCAAGGGGAGGCGAATA
AAGCTTCAAGAAGAAGAAAACGACGAACAACTAGAAGAAGAGAGAAAGGTATCGAAGAGG
GAGAGAAGAGATAACGGAAAGGTCAAAGAAGCTGAGAAGCCACTGAACGACGGTGTTAAA
GACAAAGGAGAGGAGGAAGAGCAGCCTGAGGAGCACGCTAAGCTGGTTGGTGAACCGGTT
CGATTTTTCCAGAGGATCCTGTTCTCTTTCACTCCTGAGGATACAAATCAGAAACCTTAT
GCGGCAAGCATTAAGGATATTACTCAGTCCAGAGATGGGAGCATGATGGTTACTGGACGG
TGGTTTTATCACCCTGAAGAAGCTGACAGAAAAGGTGGTGGAAATTGGCTATCCGGTGAT
ACAAGGGAGCTTTTTTACAGTTTTCACCGGGATGAGATTCCAGTAGAATCTGTGATGCAT
AAATGTGTTGTGCATTTTGTTCCCATTCACAAGCACCTCCCAAATCATAAACAACACCCT
GGTTTATCGTTCAAAAGGTTTATGACACTGTGGACCGGAAACTCTGGAAGCTTACTGATA
AAGACTATGAAGATAATAAGCAGCATGAGATTGATCTCCCTAGATCAGAAGACTCGGGTG
CGCTTTGGAGACCTTCCTGACATTGAGCCTCAAGAAACTGCTGCTCAGGAGCAGGAAGAT
CAGTTAAAGGCTAAAAGAATGCTGTGGAAAAAGAACATATCACCTCTTGATGTTTCAAGA
GAGGAAGGTTGCATGACCAGGTGA