| Fruit width (mm) | Morphology/Growth | NA | TG63 | NA | 0 | 0 | NA | | NA | 0 | 0 | fs10.1 | QTL analysis | 100/63 x IL 579 | F2 | 100/63 x IL 579 Chr10 | | 21.7 | | 10.1007/s00122-002-1132-9 | t4072.T000001 |
| Fruit width (mm) | Morphology/Growth | NA | TG130 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | 100/63 x IL152 | F2 | 100/63 x IL152 Chr03 | | 12.1 | | 10.1139/g02-096 | t4072.T000002 |
| resistance to thrips, survival of first stage instar larval to second stage | Stress | V2.0 | HpmsE078 | Chr06 | 22742555 | 22742757 | V2.0 | | NA | 0 | 0 | | QTL analysis | AC 1979 (C. annuum) x 4661 (C. chinense) | F2 | AC 1979 (C. annuum) x 4661 (C. chinense) Chr06 | 108.4 | 24.3 | | 10.1007/s00122-015-2558-1 | t4072.T000003 |
| trichome density, trichome density at reproductive stage | Morphology/Growth | V2.0 | HpmsE031 | Chr10 | 204004861 | 204005031 | V2.0 | | NA | 0 | 0 | | QTL analysis | AC 1979 (C. annuum) x 4661 (C. chinense) | F2 | AC 1979 (C. annuum) x 4661 (C. chinense) Chr10 | 40.5 | 27.5 | | 10.1007/s00122-015-2558-1 | t4072.T000004 |
| Capsaicin, capsaicin content | Others | NA | CT84 | NA | 0 | 0 | NA | | NA | 0 | 0 | cap | QTL analysis | AF | F2 | AF Chr07 | | 14.9 | | 10.1007/s00122-003-1405-y | t4072.T000005 |
| CMV (cucumber mosaic virus) resistance | Stress | NA | HpmsE040 | NA | 0 | 0 | NA | LEat014 | NA | 0 | 0 | qcmv.hb-16.1 | QTL analysis | BJ0747 x XJ0630 | F2:3 | BJ0747 x XJ0630 LG_16 | 32.4 | 2.67 | | 10.1007/s10681-013-0953-8 | t4072.T000006 |
| CMV (cucumber mosaic virus) resistance | Stress | NA | LEtat002 | NA | 0 | 0 | NA | S74 | NA | 0 | 0 | qcmv.hb-4.1 | QTL analysis | BJ0747 x XJ0630 | F2:3 | BJ0747 x XJ0630 LG_04 | 112 | 5.02 | | 10.1007/s10681-013-0953-8 | t4072.T000007 |
| CMV (cucumber mosaic virus) resistance | Stress | NA | S48 | NA | 0 | 0 | NA | HpmsE95 | NA | 0 | 0 | qcmv.hb-7.1 | QTL analysis | BJ0747 x XJ0630 | F2:3 | BJ0747 x XJ0630 LG_07 | 1.9 | 2.55 | | 10.1007/s10681-013-0953-8 | t4072.T000008 |
| CMV (cucumber mosaic virus) resistance | Stress | NA | TS471 | NA | 0 | 0 | NA | TS52 | NA | 0 | 0 | qcmv.hb-8.1 | QTL analysis | BJ0747 x XJ0630 | F2:3 | BJ0747 x XJ0630 LG_08 | 30.7 | 2.62 | | 10.1007/s10681-013-0953-8 | t4072.T000009 |
| CMV (cucumber mosaic virus) resistance | Stress | NA | TS52 | NA | 0 | 0 | NA | HpmsE1-43 | NA | 0 | 0 | qcmv.hb-8.2 | QTL analysis | BJ0747 x XJ0630 | F2:3 | BJ0747 x XJ0630 LG_08 | 67.9 | 6.86 | | 10.1007/s10681-013-0953-8 | t4072.T000010 |
| CMV (cucumber mosaic virus) resistance | Stress | NA | S63 | NA | 0 | 0 | NA | S38 | NA | 0 | 0 | qcmv.hb-8.3 | QTL analysis | BJ0747 x XJ0630 | F2:3 | BJ0747 x XJ0630 LG_08 | 200.5 | 3.97 | | 10.1007/s10681-013-0953-8 | t4072.T000011 |
| Shape | Morphology/Growth | NA | CA-1409 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 1_8 | 16.8 | 23.1 | | 10.1007/s00122-013-2225-3 | t4072.T000012 |
| p-Menth-1-en-9-al | Quality/Components | NA | CA-1188 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_01 | 20.2 | 4.1 | | 10.1007/s00122-013-2225-3 | t4072.T000013 |
| Odor | Quality/Components | NA | CA-1268 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_03 | 33.3 | 8 | | 10.1007/s00122-013-2225-3 | t4072.T000014 |
| Width1 | Morphology/Growth | NA | CA-1283 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_04 | 36.5 | 3.6 | | 10.1007/s00122-013-2225-3 | t4072.T000015 |
| Width1 | Morphology/Growth | NA | CA-1566 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_05 | 1 | 4.4 | | 10.1007/s00122-013-2225-3 | t4072.T000016 |
| Width1 | Morphology/Growth | NA | CA-0576 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_09 | 37.6 | 7.8 | | 10.1007/s00122-013-2225-3 | t4072.T000017 |
| Color unripe | Quality/Components | NA | CA-1481 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_10.1 | 18.5 | 40.1 | | 10.1007/s00122-013-2225-3 | t4072.T000018 |
| Shape | Morphology/Growth | NA | CA-1512 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_11.1 | 7.4 | 7.2 | | 10.1007/s00122-013-2225-3 | t4072.T000019 |
| Color ripe | Quality/Components | NA | CA-0038 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_12.1 | 0 | 4.6 | | 10.1007/s00122-013-2225-3 | t4072.T000020 |
| Color ripe | Quality/Components | NA | CA-1209 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_12.2 | 0 | 8.1 | | 10.1007/s00122-013-2225-3 | t4072.T000021 |
| Color ripe | Quality/Components | NA | CA-0323 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_2.1 | 1.2 | 8 | | 10.1007/s00122-013-2225-3 | t4072.T000022 |
| Pungency | Others | NA | CA-0701 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_2.2 | 15.4 | 99.9 | | 10.1007/s00122-013-2225-3 | t4072.T000023 |
| Crunchy | Quality/Components | NA | CA-1338 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_6.1 | 14.7 | 2.8 | | 10.1007/s00122-013-2225-3 | t4072.T000024 |
| Color ripe | Quality/Components | NA | CA-0097 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_6.2 | 6.1 | 7.8 | | 10.1007/s00122-013-2225-3 | t4072.T000025 |
| Length1 | Morphology/Growth | NA | CA-0270 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_7.1 | 78.2 | 5.3 | | 10.1007/s00122-013-2225-3 | t4072.T000026 |
| Width1 | Morphology/Growth | NA | CA-1423 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_8.1 | 0 | 6.7 | | 10.1007/s00122-013-2225-3 | t4072.T000027 |
| Citrate | Quality/Components | NA | CA-1436 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_8.2 | 0 | 3.1 | | 10.1007/s00122-013-2225-3 | t4072.T000028 |
| Fruit shape | Morphology/Growth | NA | A | NA | 0 | 0 | NA | | NA | 0 | 0 | fs10.1 | QTL analysis | Capsicum annuum 5226 x Capsicum chinense PI 159234 | F2 | Capsicum annuum 5226 x Capsicum chinense PI 159234 Chr10 | | 11.6 | | 10.1007/s00122-002-1132-9 | t4072.T000029 |
| Fruit diameter (mm) | Others | NA | TG44 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd1.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_01 | | 5.62 | | 10.1007/s00122-003-1204-5 | t4072.T000030 |
| Fruit diameter (mm) | Others | NA | CT-57 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd10.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_10 | | 3.73 | | 10.1007/s00122-003-1204-5 | t4072.T000031 |
| Fruit diameter (mm) | Others | NA | TG441 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd11.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_11 | | 6.33 | | 10.1007/s00122-003-1204-5 | t4072.T000032 |
| Fruit diameter (mm) | Others | NA | TG36 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd11.2 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_11 | | 5.19 | | 10.1007/s00122-003-1204-5 | t4072.T000033 |
| Fruit diameter (mm) | Others | NA | CD38 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd2.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_02 | | 7.61 | | 10.1007/s00122-003-1204-5 | t4072.T000034 |
| Fruit diameter (mm) | Others | NA | TG130 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd3.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_03 | | 6.85 | | 10.1007/s00122-003-1204-5 | t4072.T000035 |
| Fruit diameter (mm) | Others | NA | TG359 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd3.2 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_03 | | 4.8 | | 10.1007/s00122-003-1204-5 | t4072.T000036 |
| Fruit diameter (mm) | Others | NA | TG208 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd4.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_04 | | 5.8 | | 10.1007/s00122-003-1204-5 | t4072.T000037 |
| Fruit diameter (mm) | Others | NA | TG62 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd4.2 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_04 | | 6.14 | | 10.1007/s00122-003-1204-5 | t4072.T000038 |
| Fruit diameter (mm) | Others | NA | CT28 | NA | 0 | 0 | NA | | NA | 0 | 0 | fd8.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_08 | | 5.13 | | 10.1007/s00122-003-1204-5 | t4072.T000039 |
| Fruit length (mm) | Others | NA | TG44 | NA | 0 | 0 | NA | | NA | 0 | 0 | fl1.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_01 | | 4.9 | | 10.1007/s00122-003-1204-5 | t4072.T000040 |
| Fruit length (mm) | Others | NA | TG19 | NA | 0 | 0 | NA | | NA | 0 | 0 | fl1.2 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_01 | | 5.67 | | 10.1007/s00122-003-1204-5 | t4072.T000041 |
| Fruit length (mm) | Others | NA | CD38 | NA | 0 | 0 | NA | | NA | 0 | 0 | fl2.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_02 | | 15.27 | | 10.1007/s00122-003-1204-5 | t4072.T000042 |
| Fruit length (mm) | Others | NA | TG359 | NA | 0 | 0 | NA | | NA | 0 | 0 | fl3.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_03 | | 9.26 | | 10.1007/s00122-003-1204-5 | t4072.T000043 |
| Fruit length (mm) | Others | NA | TG216 | NA | 0 | 0 | NA | | NA | 0 | 0 | fl7.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_07 | | 4.47 | | 10.1007/s00122-003-1204-5 | t4072.T000044 |
| Fruit length (mm) | Others | NA | TG420P | NA | 0 | 0 | NA | | NA | 0 | 0 | fl8.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_08 | | 4.5 | | 10.1007/s00122-003-1204-5 | t4072.T000045 |
| Flowering | Others | NA | TG19 | NA | 0 | 0 | NA | | NA | 0 | 0 | flw1.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_01 | | 7.34 | | 10.1007/s00122-003-1204-5 | t4072.T000046 |
| Flowering | Others | NA | CT154 | NA | 0 | 0 | NA | | NA | 0 | 0 | flw10.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_10 | | 5.89 | | 10.1007/s00122-003-1204-5 | t4072.T000047 |
| Flowering | Others | NA | TG191 | NA | 0 | 0 | NA | | NA | 0 | 0 | flw2.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_02 | | 4.56 | | 10.1007/s00122-003-1204-5 | t4072.T000048 |
| Flowering | Others | NA | TG48 | NA | 0 | 0 | NA | | NA | 0 | 0 | flw2.2 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_02 | | 4.55 | | 10.1007/s00122-003-1204-5 | t4072.T000049 |
| Flowering | Others | NA | TG130 | NA | 0 | 0 | NA | | NA | 0 | 0 | flw3.1 | QTL analysis | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 | BC2S1 | Capsicum annuum cv. Maor x Capsicum frutescens BG 2816 LG_03 | | 3.68 | | 10.1007/s00122-003-1204-5 | t4072.T000050 |
