| Flowering Stalk Diameter, Flowering Stalk Diameter | Others | NA | nia_110 | NA | 0 | 0 | NA | sau_um365 | NA | 0 | 0 | qFSD-1-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA01 | | | | 10.3389/fpls.2015.00432 | t3711.T000032 |
| Flowering Stalk Diameter, Flowering Stalk Diameter | Others | NA | nia_112 | NA | 0 | 0 | NA | | NA | 0 | 0 | qFSD-10-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA10 | | | | 10.3389/fpls.2015.00432 | t3711.T000033 |
| Flowering Stalk Diameter, Flowering Stalk Diameter | Others | NA | nia_093 | NA | 0 | 0 | NA | | NA | 0 | 0 | qFSD-3-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA03 | | | | 10.3389/fpls.2015.00432 | t3711.T000034 |
| Flowering Stalk Diameter, Flowering Stalk Diameter | Others | NA | BRMS033 | NA | 0 | 0 | NA | | NA | 0 | 0 | qFSD-8-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA08 | | | | 10.3389/fpls.2015.00432 | t3711.T000035 |
| Flowering Stalk Diameter, Flowering Stalk Diameter | Others | NA | sau_um494 | NA | 0 | 0 | NA | cnu_MBrpgm0178 | NA | 0 | 0 | qFSD-8-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA08 | | | | 10.3389/fpls.2015.00432 | t3711.T000036 |
| Leaf Width, Leaf Width | Others | NA | sau_um308 | NA | 0 | 0 | NA | nia_104 | NA | 0 | 0 | qLW-2-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA02 | | | | 10.3389/fpls.2015.00432 | t3711.T000037 |
| Leaf Width, Leaf Width | Others | NA | mENA5a | NA | 0 | 0 | NA | | NA | 0 | 0 | qLW-6-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA06 | | | | 10.3389/fpls.2015.00432 | t3711.T000038 |
| Plant Diameter, Plant Diameter | Others | NA | sau_um314 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPD-10-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA10 | | | | 10.3389/fpls.2015.00432 | t3711.T000039 |
| Plant Diameter, Plant Diameter | Others | NA | sau_um308 | NA | 0 | 0 | NA | nia_104 | NA | 0 | 0 | qPD-2-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA02 | | | | 10.3389/fpls.2015.00432 | t3711.T000040 |
| Plant Diameter, Plant Diameter | Others | NA | cnu_149 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPD-6-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA06 | | | | 10.3389/fpls.2015.00432 | t3711.T000041 |
| Plant Diameter, Plant Diameter | Others | NA | mENA5a | NA | 0 | 0 | NA | | NA | 0 | 0 | qPD-6-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA06 | | | | 10.3389/fpls.2015.00432 | t3711.T000042 |
| Plant Diameter, Plant Diameter | Others | NA | sau_um494 | NA | 0 | 0 | NA | cnu_MBrpgm0178 | NA | 0 | 0 | qPD-8-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA08 | | | | 10.3389/fpls.2015.00432 | t3711.T000043 |
| Plant Diameter, Plant Diameter | Others | NA | cnu_046 | NA | 0 | 0 | NA | nia_011 | NA | 0 | 0 | qPD-9-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA09 | | | | 10.3389/fpls.2015.00432 | t3711.T000044 |
| Plant Height, Plant Height | Others | NA | nia_110 | NA | 0 | 0 | NA | sau_um365 | NA | 0 | 0 | qPH-1-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA01 | | | | 10.3389/fpls.2015.00432 | t3711.T000045 |
| Plant Height, Plant Height | Others | NA | sau_um367 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-1-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA01 | | | | 10.3389/fpls.2015.00432 | t3711.T000046 |
| Plant Height, Plant Height | Others | NA | sau_um124 | NA | 0 | 0 | NA | sau_um314 | NA | 0 | 0 | qPH-10-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA10 | | | | 10.3389/fpls.2015.00432 | t3711.T000047 |
| Plant Height, Plant Height | Others | NA | nia_122 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-10-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA10 | | | | 10.3389/fpls.2015.00432 | t3711.T000048 |
| Plant Height, Plant Height | Others | NA | sau_um458 | NA | 0 | 0 | NA | sau_um434 | NA | 0 | 0 | qPH-2-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA02 | | | | 10.3389/fpls.2015.00432 | t3711.T000049 |
| Plant Height, Plant Height | Others | NA | sau_um528 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-2-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA02 | | | | 10.3389/fpls.2015.00432 | t3711.T000050 |
| Plant Height, Plant Height | Others | NA | sau_um305 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-3-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA03 | | | | 10.3389/fpls.2015.00432 | t3711.T000051 |
| Plant Height, Plant Height | Others | NA | cnu_327 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-3-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA03 | | | | 10.3389/fpls.2015.00432 | t3711.T000052 |
| Plant Height, Plant Height | Others | NA | sau_um146 | NA | 0 | 0 | NA | sau_um026 | NA | 0 | 0 | qPH-3-3 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA03 | | | | 10.3389/fpls.2015.00432 | t3711.T000053 |
| Plant Height, Plant Height | Others | NA | nia_107 | NA | 0 | 0 | NA | cnu_425 | NA | 0 | 0 | qPH-5-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA05 | | | | 10.3389/fpls.2015.00432 | t3711.T000054 |
| Plant Height, Plant Height | Others | NA | sau_um181 | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-6-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA06 | | | | 10.3389/fpls.2015.00432 | t3711.T000055 |
| Plant Height, Plant Height | Others | NA | mENA5a | NA | 0 | 0 | NA | | NA | 0 | 0 | qPH-6-2 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA06 | | | | 10.3389/fpls.2015.00432 | t3711.T000056 |
| Plant Height, Plant Height | Others | NA | sau_um494 | NA | 0 | 0 | NA | cnu_MBrpgm0178 | NA | 0 | 0 | qPH-8-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA08 | | | | 10.3389/fpls.2015.00432 | t3711.T000057 |
| Plant Height, Plant Height | Others | NA | cnu_406 | NA | 0 | 0 | NA | nia_011 | NA | 0 | 0 | qPH-9-1 | QTL analysis | Chiifu x 49caixin | FALSE | Chiifu x 49caixin chrA09 | | | | 10.3389/fpls.2015.00432 | t3711.T000058 |
| Flowering time | Others | BrapaV3.0 | cnu_m143a | A01 | 1997406 | 1997597 | BrapaV3.0 | cnu_m142a | A01 | 1997973 | 1998173 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA01 | 21.6 | 3.23 | | 10.1093/dnares/dss029 | t3711.T000137 |
| Flowering time | Others | BrapaV3.0 | cnu_m036a | A02 | 9645085 | 9645249 | BrapaV3.0 | SNP-CKX3a | A02 | 6286170 | 6286372 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA02 | 17 | 14.2 | | 10.1093/dnares/dss029 | t3711.T000138 |
| Flowering time | Others | BrapaV3.0 | nia_m023a | A03 | 1672951 | 1673316 | BrapaV3.0 | At5g59140 | NA | 0 | 0 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA03 | 5 | 4.38 | | 10.1093/dnares/dss029 | t3711.T000139 |
| Flowering time | Others | BrapaV3.0 | cnu_m381a | A05 | 4197743 | 4198013 | BrapaV3.0 | ACMP00659 | A05 | 9793186 | 9793407 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA05 | 66 | 3.55 | | 10.1093/dnares/dss029 | t3711.T000140 |
| Flowering time | Others | NA | At2g18040 | NA | 0 | 0 | NA | ACMP00736 | A06 | 23734074 | 23734286 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA06 | 35.5 | 3.1 | | 10.1093/dnares/dss029 | t3711.T000141 |
| Flowering time | Others | NA | cnu_m136a | NA | 0 | 0 | NA | cnu_m308a | A07 | 28362375 | 28362599 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA07 | 83.6 | 13.63 | | 10.1093/dnares/dss029 | t3711.T000142 |
| Flowering time | Others | BrapaV3.0 | ACMP00731 | A09 | 30862273 | 30862491 | BrapaV3.0 | nia_m088a | A09 | 36666435 | 36666720 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA09 | 102 | 5.3 | | 10.1093/dnares/dss029 | t3711.T000143 |
| Flowering time | Others | BrapaV3.0 | ACMP00598 | A10 | 15798743 | 15799010 | BrapaV3.0 | cnu_mBRPGM0092a | NA | 0 | 0 | qFT1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA10 | 54.3 | 8.16 | | 10.1093/dnares/dss029 | t3711.T000144 |
| Flowering time | Others | NA | At2g18040 | NA | 0 | 0 | NA | ACMP00736 | A06 | 23734074 | 23734286 | qFT10 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA06 | 35.5 | 3.53 | | 10.1093/dnares/dss029 | t3711.T000145 |
| Flowering time | Others | NA | cnu_mBRPGM1428a | NA | 0 | 0 | NA | At2g19560 | NA | 0 | 0 | qFT11 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA07 | 4.8 | 4.17 | | 10.1093/dnares/dss029 | t3711.T000146 |
| Flowering time | Others | NA | cnu_m136a | NA | 0 | 0 | NA | cnu_m308a | A07 | 28362375 | 28362599 | qFT12 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA07 | 83.6 | 16 | | 10.1093/dnares/dss029 | t3711.T000147 |
| Flowering time | Others | NA | cnu_m136a | NA | 0 | 0 | NA | cnu_m308a | A07 | 28362375 | 28362599 | qFT13 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA07 | 83.6 | 10.86 | | 10.1093/dnares/dss029 | t3711.T000148 |
| Flowering time | Others | BrapaV3.0 | ACMP00731 | A09 | 30862273 | 30862491 | BrapaV3.0 | cnu_m372a | A09 | 34123484 | 34123659 | qFT14 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA09 | 95 | 5.19 | | 10.1093/dnares/dss029 | t3711.T000149 |
| Flowering time | Others | BrapaV3.0 | cnu_m616a | A02 | 721260 | 721528 | BrapaV3.0 | At5g12290 | NA | 0 | 0 | qFT2 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA02 | 0 | 3.6 | | 10.1093/dnares/dss029 | t3711.T000150 |
| Flowering time | Others | BrapaV3.0 | cnu_m616a | A02 | 721260 | 721528 | BrapaV3.0 | At5g12290 | NA | 0 | 0 | qFT3 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA02 | 0 | 3.14 | | 10.1093/dnares/dss029 | t3711.T000151 |
| Flowering time | Others | BrapaV3.0 | cnu_m036a | A02 | 9645085 | 9645249 | BrapaV3.0 | SNP-CKX3a | A02 | 6286170 | 6286372 | qFT4 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA02 | 17 | 18 | | 10.1093/dnares/dss029 | t3711.T000152 |
| Flowering time | Others | BrapaV3.0 | cnu_m036a | A02 | 9645085 | 9645249 | BrapaV3.0 | SNP-CKX3a | A02 | 6286170 | 6286372 | qFT5 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA02 | 17 | 13 | | 10.1093/dnares/dss029 | t3711.T000153 |
| Flowering time | Others | BrapaV3.0 | SNP-CKX3a | A02 | 6286170 | 6286372 | BrapaV3.0 | ACMP00696 | NA | 0 | 0 | qFT6 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA02 | 38.6 | 12.7 | | 10.1093/dnares/dss029 | t3711.T000154 |
| Flowering time | Others | BrapaV3.0 | nia_m023a | A03 | 1672951 | 1673316 | BrapaV3.0 | At5g59140 | NA | 0 | 0 | qFT7 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA03 | 5 | 6.02 | | 10.1093/dnares/dss029 | t3711.T000155 |
| Flowering time | Others | BrapaV3.0 | cnu_m288a | A03 | 9986707 | 9986860 | BrapaV3.0 | cnu_m213a | A07 | 3878431 | 3878611 | qFT8 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA03 | 47.1 | 4.76 | | 10.1093/dnares/dss029 | t3711.T000156 |
| Flowering time | Others | BrapaV3.0 | cnu_m381a | A05 | 4197743 | 4198013 | BrapaV3.0 | ACMP00659 | A05 | 9793186 | 9793407 | qFT9 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA05 | 66 | 7.22 | | 10.1093/dnares/dss029 | t3711.T000157 |
| Leaf width | Others | NA | cnu_mBRPGM1432a | NA | 0 | 0 | NA | cnu_mBRPGM1191a | NA | 0 | 0 | qLW1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA01 | 36.7 | 4.03 | | 10.1093/dnares/dss029 | t3711.T000165 |
| Leaf width | Others | BrapaV3.0 | cnu_m176a | A08 | 19117775 | 19118073 | BrapaV3.0 | cnu_m338a | A08 | 17532952 | 17533122 | qLW1 | QTL analysis | CRF3 | F2:3 | CRF3 ChrA08 | 47.2 | 3.45 | | 10.1093/dnares/dss029 | t3711.T000166 |
