| EC, Economic coefficient | Others | NA | N-CRB31 | NA | 0 | 0 | NA | N-BRAS084 | NA | 0 | 0 | qECa1-2 | QTL analysis | 05MPH | BC1,TH-RIL x H3 | 05MPH ChrA01 | 58.31 | 3.02 | | 10.1007/s10681-011-0533-8 | t3708.T000004 |
| EC, Economic coefficient | Others | NA | Na12G05e | NA | 0 | 0 | NA | SINE1-P1-120 | NA | 0 | 0 | qECa6-1 | QTL analysis | 05MPH | BC1,TH-RIL x H3 | 05MPH ChrA06 | 17.01 | 2.39 | | 10.1007/s10681-011-0533-8 | t3708.T000005 |
| EC, Economic coefficient | Others | NA | N-sS2331B | NA | 0 | 0 | NA | N-sORB29Ab | NA | 0 | 0 | qECc8 | QTL analysis | 05MPH | BC1,TH-RIL x H3 | 05MPH ChrC08 | 1.61 | 19.06 | | 10.1007/s10681-011-0533-8 | t3708.T000006 |
| OY, Oil yield (g/plant) | Others | v4.1 | sN3761a | chrA02_random | 191623 | 191793 | v4.1 | O110F04 | NA | 0 | 0 | qOYa2-2 | QTL analysis | 05MPH | BC1,TH-RIL x H3 | 05MPH ChrA02 | 42.21 | 2.63 | | 10.1007/s10681-011-0533-8 | t3708.T000009 |
| EC, Economic coefficient | Others | NA | N-H106N11-2-929 | NA | 0 | 0 | NA | B030F12-4-250 | NA | 0 | 0 | qECa3-1 | QTL analysis | 05TH-BC | BC1,TH-RIL x H3 | 05TH-BC ChrA03 | 59.41 | 2.98 | | 10.1007/s10681-011-0533-8 | t3708.T000020 |
| OY, Oil yield (g/plant) | Others | NA | sR11644a | NA | 0 | 0 | NA | Na10B11b | NA | 0 | 0 | qOYa3 | QTL analysis | 05TH-BC | BC1,TH-RIL x H3 | 05TH-BC ChrA03 | 62.18 | 4.73 | | 10.1007/s10681-011-0533-8 | t3708.T000023 |
| PN, Oil yield (g/plant) | Others | NA | sR11644a | NA | 0 | 0 | NA | Na10B11b | NA | 0 | 0 | qPNa3 | QTL analysis | 05TH-BC | BC1,TH-RIL x H3 | 05TH-BC ChrA03 | 62.18 | 2.9 | | 10.1007/s10681-011-0533-8 | t3708.T000026 |
| PN, Oil yield (g/plant) | Others | NA | D-SINE5-P1-440 | NA | 0 | 0 | NA | N-SINE5-P2-350 | NA | 0 | 0 | qPNu18 | QTL analysis | 05TH-BC | BC1,TH-RIL x H3 | 05TH-BC LG_L08 | 8.01 | 2.32 | | 10.1007/s10681-011-0533-8 | t3708.T000027 |
| EC, Economic coefficient | Others | NA | D-CRB16 | NA | 0 | 0 | NA | D-Ra2G05 | NA | 0 | 0 | qECa1-1 | QTL analysis | 06MPH | BC1,TH-RIL x H3 | 06MPH ChrA01 | 48.11 | 4.04 | | 10.1007/s10681-011-0533-8 | t3708.T000039 |
| EC, Economic coefficient | Others | NA | N-CNU309a | NA | 0 | 0 | NA | CRB29 | NA | 0 | 0 | qECa8 | QTL analysis | 06MPH | BC1,TH-RIL x H3 | 06MPH ChrA08 | 161.41 | 4.01 | | 10.1007/s10681-011-0533-8 | t3708.T000040 |
| OY, Oil yield (g/plant) | Others | NA | KS51170-400 | NA | 0 | 0 | NA | B059J21-1-220 | NA | 0 | 0 | qOYa9-1 | QTL analysis | 06MPH | BC1,TH-RIL x H3 | 06MPH ChrA09 | 27.41 | 4.67 | | 10.1007/s10681-011-0533-8 | t3708.T000041 |
| OY, Oil yield (g/plant) | Others | v4.1 | sR10417 | chrA02 | 14290883 | 14291109 | v4.1 | CENT4 | NA | 0 | 0 | qOYc2 | QTL analysis | 06MPH | BC1,TH-RIL x H3 | 06MPH ChrC02-2 | 21.71 | 3.18 | | 10.1007/s10681-011-0533-8 | t3708.T000042 |
| EC, Economic coefficient | Others | NA | N-B071P24-1-2 | NA | 0 | 0 | NA | CNU435 | NA | 0 | 0 | qECa3-2 | QTL analysis | 06TH-BC | BC1,TH-RIL x H3 | 06TH-BC ChrA03 | 72.61 | 3.1 | | 10.1007/s10681-011-0533-8 | t3708.T000056 |
| OY, Oil yield (g/plant) | Others | NA | Na10F06 | NA | 0 | 0 | NA | D-CRB16 | NA | 0 | 0 | qOYa1 | QTL analysis | 06TH-BC | BC1,TH-RIL x H3 | 06TH-BC ChrA01 | 46.95 | 2.35 | | 10.1007/s10681-011-0533-8 | t3708.T000058 |
| OY, Oil yield (g/plant) | Others | NA | N-PPT8-P3-262 | NA | 0 | 0 | NA | N-Na10B10a | NA | 0 | 0 | qOYa2-1 | QTL analysis | 06TH-BC | BC1,TH-RIL x H3 | 06TH-BC ChrA02 | 13.35 | 2.66 | | 10.1007/s10681-011-0533-8 | t3708.T000059 |
| OY, Oil yield (g/plant) | Others | NA | CNU241 | NA | 0 | 0 | NA | D-TRIM-P1-T-480 | NA | 0 | 0 | qOYa4-3 | QTL analysis | 06TH-BC | BC1,TH-RIL x H3 | 06TH-BC ChrA04 | 76.85 | 2.33 | | 10.1007/s10681-011-0533-8 | t3708.T000060 |
| OY, Oil yield (g/plant) | Others | v4.1 | sR10417 | chrA02 | 14290883 | 14291109 | v4.1 | CENT4 | NA | 0 | 0 | qOYc2 | QTL analysis | 06TH-BC | BC1,TH-RIL x H3 | 06TH-BC ChrC02-2 | 21.68 | 2.6 | | 10.1007/s10681-011-0533-8 | t3708.T000061 |
| Seedling development, gene expression level of Ribulose1,5-bisphosphate carboxylase/oxygenase small subunit (RBC) | Others | NA | BN051924-0307 | NA | 0 | 0 | NA | | NA | 0 | 0 | | GWAS | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | NULL | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | | | 5.575 | 10.1186/s12870-015-0496-3 | t3708.T000113 |
| Seedling development, gene expression level of Fructose-1,6-bisphosphatase precursor (FBP) | Others | NA | Bn-ctg7180014767990-p1760 | NA | 0 | 0 | NA | | NA | 0 | 0 | | GWAS | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | NULL | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | | | 4.02 | 10.1186/s12870-015-0496-3 | t3708.T000118 |
| Seedling development, Maximum plant diameter (MAD) | Others | NA | BN054115-0054 | NA | 0 | 0 | NA | | NA | 0 | 0 | | GWAS | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | NULL | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | | | 4.075 | 10.1186/s12870-015-0496-3 | t3708.T000122 |
| Seedling development, gene expression level of Fructose-1,6-bisphosphatase precursor (FBP) | Others | NA | Bn-ctg7180014767990-p1760 | NA | 0 | 0 | NA | | NA | 0 | 0 | | GWAS | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | NULL | 509 B. napus inbred lines (winter oilseed rape (OSR): 183, winter fodder: 22 , swede: 73 , semi-winter OSR: 7, spring OSR: 204, | | | 4.02 | 10.1186/s12870-015-0496-3 | t3708.T000126 |
| Seed yield, Seed yield under normal Phosphorus treatment | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | 07SYNP-C5 | QTL analysis | B104-2 x Eyou Changjia | RIL | B104-2 x Eyou Changjia ChrC05 | 57.9 | | | 10.1007/s10681-014-1110-8 | t3708.T000179 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3145484 | NA | 0 | 0 | NA | 3095279 | NA | 0 | 0 | Qrps.wwai-A03a | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrA03 | | 2.49 | | 10.1371/journal.pone.0101673 | t3708.T000395 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3167032 | NA | 0 | 0 | NA | 3082606 | NA | 0 | 0 | Qrps.wwai-A03b | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrA03 | | 2.95 | | 10.1371/journal.pone.0101673 | t3708.T000396 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3079412 | NA | 0 | 0 | NA | 3110084 | NA | 0 | 0 | Qrps.wwai-A07 | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrA07 | | 3.19 | | 10.1371/journal.pone.0101673 | t3708.T000397 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3118357 | NA | 0 | 0 | NA | 3126254 | NA | 0 | 0 | Qrps.wwai-A09a | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrA09 | | 2.9 | | 10.1371/journal.pone.0101673 | t3708.T000398 |
| Pod shatter resistance, Rupture Energy | Others | NA | 3089525 | NA | 0 | 0 | NA | 3155356 | NA | 0 | 0 | Qrps.wwai-A09b | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrA09 | | 4.41 | | 10.1371/journal.pone.0101673 | t3708.T000399 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3149536 | NA | 0 | 0 | NA | 3154228 | NA | 0 | 0 | Qrps.wwai-C03 | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrC03 | | 5.14 | | 10.1371/journal.pone.0101673 | t3708.T000400 |
| Pod shatter resistance, Rupture Energy | Others | NA | 3129479 | NA | 0 | 0 | NA | 3111779 | NA | 0 | 0 | Qrps.wwai-C04 | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrC04 | | 3.46 | | 10.1371/journal.pone.0101673 | t3708.T000401 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3108912 | NA | 0 | 0 | NA | 3153168 | NA | 0 | 0 | Qrps.wwai-C06a | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrC06 | | 3.99 | | 10.1371/journal.pone.0101673 | t3708.T000402 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3170023 | NA | 0 | 0 | NA | 3110645 | NA | 0 | 0 | Qrps.wwai-C06b | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 ChrC06 | | 2.95 | | 10.1371/journal.pone.0101673 | t3708.T000403 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3134348 | NA | 0 | 0 | NA | 3174018 | NA | 0 | 0 | Qrps.wwai-C08a | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 C08 | | 2.02 | | 10.1371/journal.pone.0101673 | t3708.T000404 |
| Pod shatter resistance, #RELSQ (Rupture energy adjusted for variation in pod length) | Others | NA | 3142299 | NA | 0 | 0 | NA | 3112431 | NA | 0 | 0 | Qrps.wwai-C08b | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 C08 | | 8.25 | | 10.1371/journal.pone.0101673 | t3708.T000405 |
| Pod shatter resistance, Rupture Energy | Others | NA | 3117318 | NA | 0 | 0 | NA | 3162074 | NA | 0 | 0 | Qrps.wwai-C08c | QTL analysis | BLN2762 x Surpass400 | DH | BLN2762 x Surpass400 C08 | | 2.39 | | 10.1371/journal.pone.0101673 | t3708.T000406 |
| P (proportion of dead plants), adult blackleg resistance | Others | NA | OPL12.980 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Darmor-bzh x Yudal | DH | Darmor-bzh x Yudal LG_DY05 | | 3 | | 10.1007/s001220050704 | t3708.T000602 |
| P (proportion of dead plants), adult blackleg resistance | Others | NA | OPE02.1200 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Darmor-bzh x Yudal | DH | Darmor-bzh x Yudal LG_DY11 | | 4.2 | | 10.1007/s001220050704 | t3708.T000607 |
| P (proportion of dead plants), adult blackleg resistance | Others | NA | OPP07.1665 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Darmor-bzh x Yudal | DH | Darmor-bzh x Yudal LG_DY13 | | 2.7 | | 10.1007/s001220050704 | t3708.T000608 |
| controlling homeologous pairing at metaphase I in haploids, PrBn gene (homeologous pairing regulator in B. napus) | Others | NA | E36M65h | NA | 0 | 0 | NA | | NA | 0 | 0 | PrBn | QTL analysis | Darmor-bzh x Yudal | F1 | Darmor-bzh x Yudal LG_DY15 | 34.9 | 7.7 | | 10.1534/genetics.106.064071 | t3708.T000610 |
| controlling homeologous pairing at metaphase I in haploids, PrBn gene (homeologous pairing regulator in B. napus) | Others | NA | P91M34b | NA | 0 | 0 | NA | | NA | 0 | 0 | uni13.1 | QTL analysis | Darmor-bzh x Yudal | F1 | Darmor-bzh x Yudal LG_DY13 | 43.4 | 2.5 | | 10.1534/genetics.106.064071 | t3708.T000611 |
| controlling homeologous pairing at metaphase I in haploids, PrBn gene (homeologous pairing regulator in B. napus) | Others | NA | R10.2560 | NA | 0 | 0 | NA | | NA | 0 | 0 | uni1a.1 | QTL analysis | Darmor-bzh x Yudal | F1 | Darmor-bzh x Yudal LG_DY01a | 110.25 | 2.9 | | 10.1534/genetics.106.064071 | t3708.T000612 |
| controlling homeologous pairing at metaphase I in haploids, PrBn gene (homeologous pairing regulator in B. napus) | Others | NA | E35M64k | NA | 0 | 0 | NA | | NA | 0 | 0 | uni4.1 | QTL analysis | Darmor-bzh x Yudal | F1 | Darmor-bzh x Yudal LG_DY04 | 135.67 | 3.3 | | 10.1534/genetics.106.064071 | t3708.T000613 |
| SLL, stem lesion length | Others | NA | pX133eH | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | HUA | DH | HUA LG_N05 | 32.8 | 3.7 | | 10.1007/s00122-005-0154-5 | t3708.T000949 |
| SLL, stem lesion length | Others | NA | pW137bH | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | HUA | DH | HUA LG_N14 | 35.4 | 6.3 | | 10.1007/s00122-005-0154-5 | t3708.T000951 |
| SLL, stem lesion length | Others | NA | pW242cH | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | HUA | DH | HUA LG_N16 | 32.7 | 7.5 | | 10.1007/s00122-005-0154-5 | t3708.T000952 |
| SLL, stem lesion length | Others | NA | pX115bH | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | HUA | DH | HUA LG_N19 | 1.73 | 5 | | 10.1007/s00122-005-0154-5 | t3708.T000953 |
| oil yield, oil yield calculated from the product of oil content and seed yield | Others | NA | Ol10C01 | NA | 0 | 0 | NA | | NA | 0 | 0 | qOYa4-1(06) | QTL analysis | Huashuang 3 x Tianmen Youcaibai | RIL | Huashuang 3 x Tianmen Youcaibai ChrA04 | 32.9 | 4.22 | | 10.1111/j.1365-313X.2011.04679.x | t3708.T000973 |
| oil yield, oil yield calculated from the product of oil content and seed yield | Others | NA | N-CRB17 | NA | 0 | 0 | NA | | NA | 0 | 0 | qOYa4-2(05) | QTL analysis | Huashuang 3 x Tianmen Youcaibai | RIL | Huashuang 3 x Tianmen Youcaibai ChrA04 | 48.39 | 3.85 | | 10.1111/j.1365-313X.2011.04679.x | t3708.T000974 |
| oil yield, oil yield calculated from the product of oil content and seed yield | Others | NA | SINE5-P4-200 | NA | 0 | 0 | NA | | NA | 0 | 0 | qOYa4-3(06) | QTL analysis | Huashuang 3 x Tianmen Youcaibai | RIL | Huashuang 3 x Tianmen Youcaibai ChrA04 | 98.49 | 3.18 | | 10.1111/j.1365-313X.2011.04679.x | t3708.T000975 |
| oil yield, oil yield calculated from the product of oil content and seed yield | Others | NA | N-sN2837 | NA | 0 | 0 | NA | | NA | 0 | 0 | qOYa6-1(06) | QTL analysis | Huashuang 3 x Tianmen Youcaibai | RIL | Huashuang 3 x Tianmen Youcaibai ChrA06 | 41.82 | 3.99 | | 10.1111/j.1365-313X.2011.04679.x | t3708.T000976 |
| oil yield, oil yield calculated from the product of oil content and seed yield | Others | NA | N-CB10029b | NA | 0 | 0 | NA | | NA | 0 | 0 | qOYa9-1(06) | QTL analysis | Huashuang 3 x Tianmen Youcaibai | RIL | Huashuang 3 x Tianmen Youcaibai ChrA09 | 55.91 | 3.5 | | 10.1111/j.1365-313X.2011.04679.x | t3708.T000977 |
