| AlphaCR, Alpha-carotene | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | alphacr8.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_08 | 110 | 11.18 | | 10.1007/s00122-010-1327-4 | t3656.T000001 |
| BetaCR, Beta-carotene | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | betacr2.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 7 | 2.97 | | 10.1007/s00122-010-1327-4 | t3656.T000002 |
| BetaCR, Beta-carotene | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | betacr6.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_06 | 88 | 4 | | 10.1007/s00122-010-1327-4 | t3656.T000003 |
| FLC, Flesh color | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | flc2.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 7 | 3.03 | | 10.1007/s00122-010-1327-4 | t3656.T000015 |
| FLC, Flesh color | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | flc6.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_06 | 88 | 5.94 | | 10.1007/s00122-010-1327-4 | t3656.T000016 |
| FLC, Flesh color | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | flc8.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_08 | 111 | 2.48 | | 10.1007/s00122-010-1327-4 | t3656.T000017 |
| GLU, Glucose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | glu4.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_04 | 23 | 3.6 | | 10.1007/s00122-010-1327-4 | t3656.T000025 |
| LUT, Lutein | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | lut8.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_08 | 110 | 4.1 | | 10.1007/s00122-010-1327-4 | t3656.T000026 |
| NTC, Net cover | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntc08 12.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_12 | 12 | 3.54 | | 10.1007/s00122-010-1327-4 | t3656.T000029 |
| NTC, Net cover | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntc11.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_11 | 56 | 3.52 | | 10.1007/s00122-010-1327-4 | t3656.T000030 |
| NTC, Net cover | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntc2.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 36 | 11.57 | | 10.1007/s00122-010-1327-4 | t3656.T000031 |
| NTD, Net density | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntd2.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 7 | 4.99 | | 10.1007/s00122-010-1327-4 | t3656.T000032 |
| NTD, Net density | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntd2.2 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 18 | 5.07 | | 10.1007/s00122-010-1327-4 | t3656.T000033 |
| NTD, Net density | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntd2.3 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 45 | 8.79 | | 10.1007/s00122-010-1327-4 | t3656.T000034 |
| NTD, Net density | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | ntd2.4 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 59 | 3.23 | | 10.1007/s00122-010-1327-4 | t3656.T000035 |
| pH, pH | Others | NA | ACL2 | NA | 0 | 0 | NA | | NA | 0 | 0 | pH-11.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_11 | 48 | 2.4 | | 10.1007/s00122-012-1837-3 | t3656.T000036 |
| pH, pH | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | pH-12.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_12-2 | 15 | 2.51 | | 10.1007/s00122-012-1837-3 | t3656.T000037 |
| pH, pH | Others | NA | pH | NA | 0 | 0 | NA | | NA | 0 | 0 | pH-8.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_08 | 67 | 35.2 | | 10.1007/s00122-012-1837-3 | t3656.T000038 |
| PHYT, Phytoene | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | phy6.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_06 | 85 | 4.81 | | 10.1007/s00122-010-1327-4 | t3656.T000039 |
| PHYT, Phytoene | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | phy6.2 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_06 | 101 | 3.59 | | 10.1007/s00122-010-1327-4 | t3656.T000040 |
| STR, Stripes | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | str06 9.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_09 | 54 | 3.38 | | 10.1007/s00122-010-1327-4 | t3656.T000041 |
| STR, Stripes | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | str11.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_11 | 27 | 15.96 | | 10.1007/s00122-010-1327-4 | t3656.T000042 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc2.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 17 | 3 | | 10.1007/s00122-010-1327-4 | t3656.T000043 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc2.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_08 | 102 | 3.7 | | 10.1007/s00122-010-1327-4 | t3656.T000044 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc2.2 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 37 | 3.4 | | 10.1007/s00122-010-1327-4 | t3656.T000045 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc2.3 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_02 | 46 | 3.7 | | 10.1007/s00122-010-1327-4 | t3656.T000046 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc3.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_03 | 89 | 2.3 | | 10.1007/s00122-010-1327-4 | t3656.T000047 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc5.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_03 | 89 | 2.9 | | 10.1007/s00122-010-1327-4 | t3656.T000048 |
| SUC, Sucrose | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | suc8.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_05 | 16 | 2.7 | | 10.1007/s00122-010-1327-4 | t3656.T000049 |
| SUT, Sutures | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | sut06 9.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_09 | 38 | 3.05 | | 10.1007/s00122-010-1327-4 | t3656.T000050 |
| SUT, Sutures | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | sut06 9.2 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_09 | 53 | 3.29 | | 10.1007/s00122-010-1327-4 | t3656.T000051 |
| SUT, Sutures | Others | NA | | NA | 0 | 0 | NA | | NA | 0 | 0 | sut11.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_11 | 27 | 9.22 | | 10.1007/s00122-010-1327-4 | t3656.T000052 |
| Uri, Uridine (g/g) | Others | NA | pH | NA | 0 | 0 | NA | | NA | 0 | 0 | Uri-8.1 | QTL analysis | 414 x Dul | RIL | 414 x Dul LG_08 | 78 | 10.83 | | 10.1007/s00122-012-1837-3 | t3656.T000056 |
| Pm-Edisto47, resistance to Px1A (P. xanthii race 1 strain) | Others | NA | GCM295 | NA | 0 | 0 | NA | DE1469 | NA | 0 | 0 | Pm-Edisto47-1 | QTL analysis | Edisto47 x Queen | BC1 | Edisto47 x Queen LG_V | 32.9 | 6 | | 10.1007/s10681-013-1000-5 | t3656.T000072 |
| Pm-Edisto47, resistance to Px1A (P. xanthii race 1 strain) | Others | v3.6.1 | SSR219093 | chr02 | 842056 | 842148 | v3.6.1 | SSR252089 | chr02 | 1004371 | 1004459 | Pm-Edisto47-2 | QTL analysis | Edisto47 x Queen | BC1 | Edisto47 x Queen LG_II | 7.6 | 6.7 | | 10.1007/s10681-013-1000-5 | t3656.T000073 |
| EA, earliness | Others | NA | MC68 | NA | 0 | 0 | NA | Aox2 | NA | 0 | 0 | ea1.1 | QTL analysis | Piel de Sapo x PI 161375 | DH | Piel de Sapo x PI 161375 LG_01 | 13 | 6.95 | | 10.1007/s00122-003-1483-x | t3656.T000081 |
| EA, earliness | Others | NA | MC8 | NA | 0 | 0 | NA | MC21 | NA | 0 | 0 | ea1.1 | QTL analysis | Piel de Sapo x PI 161375 | DH | Piel de Sapo x PI 161375 LG_12 | 42 | 5.33 | | 10.1007/s00122-003-1483-x | t3656.T000082 |
| EA, earliness | Others | NA | MC11 | NA | 0 | 0 | NA | MC78 | NA | 0 | 0 | ea1.2 | QTL analysis | Piel de Sapo x PI 161375 | DH | Piel de Sapo x PI 161375 LG_01 | 33 | 4.06 | | 10.1007/s00122-003-1483-x | t3656.T000083 |
| EA, earliness | Others | v3.6.1 | CMAT141 | chr08 | 28258672 | 28258846 | v3.6.1 | MC138 | NA | 0 | 0 | ea1.3 | QTL analysis | Piel de Sapo x PI 161375 | F2 | Piel de Sapo x PI 161375 LG_01 | 65 | 4.3 | | 10.1007/s00122-003-1483-x | t3656.T000084 |
| EA, earliness | Others | NA | MC112 | NA | 0 | 0 | NA | MC67 | NA | 0 | 0 | ea10.1 | QTL analysis | Piel de Sapo x PI 161375 | DH | Piel de Sapo x PI 161375 LG_09 | 33 | 7.07 | | 10.1007/s00122-003-1483-x | t3656.T000085 |
| EA, earliness | Others | NA | CM122 | NA | 0 | 0 | NA | MC219 | NA | 0 | 0 | ea12.1 | QTL analysis | Piel de Sapo x PI 161375 | DH | Piel de Sapo x PI 161375 LG_10 | 76 | 4.13 | | 10.1007/s00122-003-1483-x | t3656.T000086 |
| EA, earliness | Others | NA | MC226 | NA | 0 | 0 | NA | MC8 | NA | 0 | 0 | ea12.1 | QTL analysis | Piel de Sapo x PI 161375 | F2 | Piel de Sapo x PI 161375 LG_12 | 30 | 2.48 | | 10.1007/s00122-003-1483-x | t3656.T000087 |
| EA, earliness | Others | NA | MC21 | NA | 0 | 0 | NA | MC224 | NA | 0 | 0 | ea12.2 | QTL analysis | Piel de Sapo x PI 161375 | F2 | Piel de Sapo x PI 161375 LG_12 | 62 | 3.8 | | 10.1007/s00122-003-1483-x | t3656.T000088 |
| EA, earliness | Others | NA | MC296 | NA | 0 | 0 | NA | MC365 | NA | 0 | 0 | ea2.1 | QTL analysis | Piel de Sapo x PI 161375 | F2 | Piel de Sapo x PI 161375 LG_02 | 50 | 4.62 | | 10.1007/s00122-003-1483-x | t3656.T000089 |
| EA, earliness | Others | NA | MC149 | NA | 0 | 0 | NA | MC17 | NA | 0 | 0 | ea9.1 | QTL analysis | Piel de Sapo x PI 161375 | F2 | Piel de Sapo x PI 161375 LG_09 | 0 | 6.75 | | 10.1007/s00122-003-1483-x | t3656.T000090 |
| EA, earliness | Others | NA | CMGA172 | NA | 0 | 0 | NA | MC112 | NA | 0 | 0 | ea9.2 | QTL analysis | Piel de Sapo x PI 161375 | DH | Piel de Sapo x PI 161375 LG_09 | 28 | 5.82 | | 10.1007/s00122-003-1483-x | t3656.T000091 |
| QBetaC endocarp, the quantity of Beta-carotene in endocarp | Others | NA | CMTCN41 | NA | 0 | 0 | NA | | NA | 0 | 0 | beta-carE.6.1 | QTL analysis | Q 3-2-2 x Top Mark | F2:3 | Q 3-2-2 x Top Mark LG_VI | 40.11 | 7.27 | | 10.1007/s00122-009-1085-3 | t3656.T000133 |
| QBetaC endocarp, the quantity of Beta-carotene in endocarp | Others | v3.6.1 | Or | chr09 | 21689875 | 21690191 | v3.6.1 | | NA | 0 | 0 | beta-carE.9.1 | QTL analysis | Q 3-2-2 x Top Mark | F2:3 | Q 3-2-2 x Top Mark LG_IX | 41.3 | 49.7 | | 10.1007/s00122-009-1085-3 | t3656.T000134 |
| QBetaC mesocarp, the quantity of Beta-carotene in mesocarp (flesh color) | Others | NA | CMN21_25 | NA | 0 | 0 | NA | | NA | 0 | 0 | beta-carM.8.1 | QTL analysis | Q 3-2-2 x Top Mark | F2:3 | Q 3-2-2 x Top Mark LG_VIII | 87 | 7.81 | | 10.1007/s00122-009-1085-3 | t3656.T000135 |
| QBetaC mesocarp, the quantity of Beta-carotene in mesocarp (flesh color) | Others | v3.6.1 | Or | chr09 | 21689875 | 21690191 | v3.6.1 | | NA | 0 | 0 | beta-carM.9.1 | QTL analysis | Q 3-2-2 x Top Mark | F2:3 | Q 3-2-2 x Top Mark LG_IX | 37.6 | 23.4 | | 10.1007/s00122-009-1085-3 | t3656.T000136 |
