| Fruit width (mm) | Morphology/Growth | NA | TG63 | NA | 0 | 0 | NA | | NA | 0 | 0 | fs10.1 | QTL analysis | 100/63 x IL 579 | F2 | 100/63 x IL 579 Chr10 | | 21.7 | | 10.1007/s00122-002-1132-9 | t4072.T000001 |
| Fruit width (mm) | Morphology/Growth | NA | TG130 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | 100/63 x IL152 | F2 | 100/63 x IL152 Chr03 | | 12.1 | | 10.1139/g02-096 | t4072.T000002 |
| trichome density, trichome density at reproductive stage | Morphology/Growth | V2.0 | HpmsE031 | Chr10 | 204004861 | 204005031 | V2.0 | | NA | 0 | 0 | | QTL analysis | AC 1979 (C. annuum) x 4661 (C. chinense) | F2 | AC 1979 (C. annuum) x 4661 (C. chinense) Chr10 | 40.5 | 27.5 | | 10.1007/s00122-015-2558-1 | t4072.T000004 |
| Shape | Morphology/Growth | NA | CA-1409 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 1_8 | 16.8 | 23.1 | | 10.1007/s00122-013-2225-3 | t4072.T000012 |
| Width1 | Morphology/Growth | NA | CA-1283 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_04 | 36.5 | 3.6 | | 10.1007/s00122-013-2225-3 | t4072.T000015 |
| Width1 | Morphology/Growth | NA | CA-1566 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_05 | 1 | 4.4 | | 10.1007/s00122-013-2225-3 | t4072.T000016 |
| Width1 | Morphology/Growth | NA | CA-0576 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_09 | 37.6 | 7.8 | | 10.1007/s00122-013-2225-3 | t4072.T000017 |
| Shape | Morphology/Growth | NA | CA-1512 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_11.1 | 7.4 | 7.2 | | 10.1007/s00122-013-2225-3 | t4072.T000019 |
| Length1 | Morphology/Growth | NA | CA-0270 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_7.1 | 78.2 | 5.3 | | 10.1007/s00122-013-2225-3 | t4072.T000026 |
| Width1 | Morphology/Growth | NA | CA-1423 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | C. annuum x C. baccatum BC2 | BC2S1 | C. annuum x C. baccatum BC2 LG_8.1 | 0 | 6.7 | | 10.1007/s00122-013-2225-3 | t4072.T000027 |
| Fruit shape | Morphology/Growth | NA | A | NA | 0 | 0 | NA | | NA | 0 | 0 | fs10.1 | QTL analysis | Capsicum annuum 5226 x Capsicum chinense PI 159234 | F2 | Capsicum annuum 5226 x Capsicum chinense PI 159234 Chr10 | | 11.6 | | 10.1007/s00122-002-1132-9 | t4072.T000029 |
| Trichome in F3 stem | Morphology/Growth | V2.0 | HpmsE031 | Chr10 | 204004861 | 204005031 | V2.0 | | NA | 0 | 0 | Ptel1 | QTL analysis | CM334 x Chilsungcho | F2:3 | CM334 x Chilsungcho LG_24 | | 29.24 | | 10.1007/s00122-010-1510-7 | t4072.T000094 |
| Trichome in F3 calyx | Morphology/Growth | NA | EAMC167 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel10 | QTL analysis | CM334 x Chilsungcho | F2:3 | CM334 x Chilsungcho LG_15 | | 2.44 | | 10.1007/s00122-010-1510-7 | t4072.T000096 |
| Trichome in F3 calyx | Morphology/Growth | NA | EAMG47 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel11 | QTL analysis | CM334 x Chilsungcho | F2:3 | CM334 x Chilsungcho LG_15 | | 2.8 | | 10.1007/s00122-010-1510-7 | t4072.T000097 |
| Trichome in F2 calyx | Morphology/Growth | NA | m104 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel2 | QTL analysis | CM334 x Chilsungcho | F2 | CM334 x Chilsungcho LG_02 | | 12.38 | | 10.1007/s00122-010-1510-7 | t4072.T000098 |
| Trichome in F2 calyx | Morphology/Growth | NA | w53 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel3 | QTL analysis | CM334 x Chilsungcho | F2 | CM334 x Chilsungcho LG_06 | | 3.45 | | 10.1007/s00122-010-1510-7 | t4072.T000099 |
| Trichome in F2 calyx | Morphology/Growth | NA | m96 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel4 | QTL analysis | CM334 x Chilsungcho | F2 | CM334 x Chilsungcho LG_11 | | 2.68 | | 10.1007/s00122-010-1510-7 | t4072.T000100 |
| Trichome in F2 calyx | Morphology/Growth | NA | EAMG66 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel5 | QTL analysis | CM334 x Chilsungcho | F2 | CM334 x Chilsungcho LG_16 | | 3.1 | | 10.1007/s00122-010-1510-7 | t4072.T000101 |
| Trichome in F2 calyx | Morphology/Growth | NA | CAN15 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel6 | QTL analysis | CM334 x Chilsungcho | F2 | CM334 x Chilsungcho LG_31 | | 2.55 | | 10.1007/s00122-010-1510-7 | t4072.T000102 |
| Trichome in F3 calyx | Morphology/Growth | NA | EAMG74 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel7 | QTL analysis | CM334 x Chilsungcho | F2:3 | CM334 x Chilsungcho LG_10 | | 3.45 | | 10.1007/s00122-010-1510-7 | t4072.T000103 |
| Trichome in F3 calyx | Morphology/Growth | NA | EAMC192 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel8 | QTL analysis | CM334 x Chilsungcho | F2:3 | CM334 x Chilsungcho LG_13 | | 2.48 | | 10.1007/s00122-010-1510-7 | t4072.T000104 |
| Trichome in F3 calyx | Morphology/Growth | NA | m74 | NA | 0 | 0 | NA | | NA | 0 | 0 | Ptel9 | QTL analysis | CM334 x Chilsungcho | F2:3 | CM334 x Chilsungcho LG_14 | | 3.12 | | 10.1007/s00122-010-1510-7 | t4072.T000105 |
| additive effects for Fruit shape | Morphology/Growth | NA | CAPS_CONTIG.816 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Early Jalapeno x CM334 | RIL | Early Jalapeno x CM334 Chr01 | 124 | 1.98 | | 10.1094/PHYTO-05-13-0143-R | t4072.T000106 |
| additive effects for Fruit shape | Morphology/Growth | NA | KS26009E11 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Early Jalapeno x CM334 | RIL | Early Jalapeno x CM334 Chr10 | 2.2 | 1.79 | | 10.1094/PHYTO-05-13-0143-R | t4072.T000112 |
| Fruit shape | Morphology/Growth | NA | TG130 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Maor x BG 2816 | BC2S1 | Maor x BG 2816 Chr03 | | 14.1 | | 10.1139/g02-096 | t4072.T000114 |
| Fruit shape | Morphology/Growth | NA | P14/M59-276 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | Maor x Perennial | F2:3 | Maor x Perennial Chr03 | | 41.8 | | 10.1139/g02-096 | t4072.T000115 |
| flowering time | Morphology/Growth | NA | CaAP2 | NA | 0 | 0 | NA | | NA | 0 | 0 | | QTL analysis | PI 527325 (USDA-early) x PI 511887 (USDA-late) | F2,BC2F2 | PI 527325 (USDA-early) x PI 511887 (USDA-late) Chr02 | | 18 | | 10.1007/s00122-015-2491-3 | t4072.T000116 |
| FCC, Fruit Cross-sectional Corrugation | Morphology/Growth | NA | a017_1 | NA | 0 | 0 | NA | a057_2 | NA | 0 | 0 | qFCC-12-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_12 | 57.1 | 2.891 | | 10.1007/s10059-012-0018-1 | t4072.T000158 |
| FL, Fruit Length | Morphology/Growth | NA | ca04602 | NA | 0 | 0 | NA | a130_2 | NA | 0 | 0 | qFL-4-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_04 | 90.6 | 4.1049 | | 10.1007/s10059-012-0018-1 | t4072.T000159 |
| FW, Fruit Width | Morphology/Growth | NA | cs19002 | NA | 0 | 0 | NA | CA00986b | Chr10 | 198978531 | 198978592 | qFW-10-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_10 | 174.3 | 3.2406 | | 10.1007/s10059-012-0018-1 | t4072.T000160 |
| FW, Fruit Width | Morphology/Growth | NA | a078_1 | NA | 0 | 0 | NA | a100_6 | NA | 0 | 0 | qFW-d-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean d | 7.2 | 4.1439 | | 10.1007/s10059-012-0018-1 | t4072.T000161 |
| FWT, Fruit Wall Thickness | Morphology/Growth | NA | ca13319 | NA | 0 | 0 | NA | ca12098a | NA | 0 | 0 | qFWT-2-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_02 | 48.4 | 2.6845 | | 10.1007/s10059-012-0018-1 | t4072.T000162 |
| FWT, Fruit Wall Thickness | Morphology/Growth | NA | a015_6 | NA | 0 | 0 | NA | cs26051 | NA | 0 | 0 | qFWT-3-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_03a | 85.5 | 2.8688 | | 10.1007/s10059-012-0018-1 | t4072.T000163 |
| LL, Leaf Length | Morphology/Growth | NA | a100_5 | NA | 0 | 0 | NA | a152_5 | NA | 0 | 0 | qLL-12-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_12 | 33.2 | 3.3898 | | 10.1007/s10059-012-0018-1 | t4072.T000164 |
| LL, Leaf Length | Morphology/Growth | NA | a154_2 | NA | 0 | 0 | NA | a170_5 | NA | 0 | 0 | qLL-3-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_03a | 35.4 | 4.1274 | | 10.1007/s10059-012-0018-1 | t4072.T000165 |
| LL, Leaf Length | Morphology/Growth | NA | a171_1 | NA | 0 | 0 | NA | a114_1 | NA | 0 | 0 | qLL-8-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_08 | 71.2 | 3.4618 | | 10.1007/s10059-012-0018-1 | t4072.T000166 |
| SD, Stem Diameter | Morphology/Growth | NA | a154_7 | NA | 0 | 0 | NA | a134_3 | NA | 0 | 0 | qSD-4-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_04 | 86.8 | 3.5348 | | 10.1007/s10059-012-0018-1 | t4072.T000179 |
| SD, Stem Diameter | Morphology/Growth | NA | CA524065 | NA | 0 | 0 | NA | a151_5 | NA | 0 | 0 | qSD-5-1 | QTL analysis | YCM334 x Taean | RIL | YCM334 x Taean LG_05 | 157 | 3.6104 | | 10.1007/s10059-012-0018-1 | t4072.T000180 |
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