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アセンブル , シーケンス , Assemble , Sequence , Schrenkiella parvula , Schrenkiella , スクレンキエラ

Schrenkiella parvula

Genome Assembly ID:t98039.G001

Sequence Name:TpV8-4

Details of the Assembled Genome Sequences

Assembly Name TpV8-4 Biological Sample NA
Number of Sequences 2,136 Number of Chromosomes 2n = 2x = 14
Total Length (bp) 123,600,562 N50 Length (bp) 6,763,654
Number of Genes 27,132 Number of Genes Source File TpV84ORFs.protein
Number of Genes Annotated by Hayai-annotation 27,132 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 454 Read Depth 6x
Assembly Method Newbler v. 2.5, ABySS v. 1.2.1, minimus2 Estimated Genome Size (Mb) 140
Sequencing Method Comments NA Comments The seeds were derived from a single plant propagated from single seeds over eight successive generations. The original accession was collected from a salt lake in Tuz Golu, central Turkey, at an elevation of 905 m above sea level. Synonym: Thellungiella parvula, Eutrema parvulum
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Maheshi Dassanayake (University of Illinois at Urbana-Champaign), Dong-Ha Oh (ditto), Dae-Jin Yun (Gyeongsang National University) Data Source Thellungiella - an extremophile for post-modern molecular genetics
DOI/PMID 10.1038/ng.889 Data Source URL http://thellungiella.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.3%[S:97.3%,D:1.0%],F:0.7%,M:1.0%,n:1614 BUSCO Gene (pep/cds) C:95.9%[S:93.3%,D:2.6%],F:1.9%,M:2.2%,n:1614

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