Sequence Name:TpV8-4
Assembly Name | TpV8-4 | Biological Sample | NA |
Number of Sequences | 2,136 | Number of Chromosomes | 2n = 2x = 14 |
Total Length (bp) | 123,600,562 | N50 Length (bp) | 6,763,654 |
Number of Genes | 27,132 | Number of Genes Source File | TpV84ORFs.protein |
Number of Genes Annotated by Hayai-annotation | 27,132 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, 454 | Read Depth | 6x |
Assembly Method | Newbler v. 2.5, ABySS v. 1.2.1, minimus2 | Estimated Genome Size (Mb) | 140 |
Sequencing Method Comments | NA | Comments | The seeds were derived from a single plant propagated from single seeds over eight successive generations. The original accession was collected from a salt lake in Tuz Golu, central Turkey, at an elevation of 905 m above sea level. Synonym: Thellungiella parvula, Eutrema parvulum |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Maheshi Dassanayake (University of Illinois at Urbana-Champaign), Dong-Ha Oh (ditto), Dae-Jin Yun (Gyeongsang National University) | Data Source | Thellungiella - an extremophile for post-modern molecular genetics |
DOI/PMID | 10.1038/ng.889 | Data Source URL | http://thellungiella.org/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.3%[S:97.3%,D:1.0%],F:0.7%,M:1.0%,n:1614 | BUSCO Gene (pep/cds) | C:95.9%[S:93.3%,D:2.6%],F:1.9%,M:2.2%,n:1614 |