Saccharum spontaneumSequence Name：Sspon.HiC_chr_asm
| Assembly Name | Sspon.HiC_chr_asm | Biological Sample | AP85-441 |
| Number of Sequences | 32 | Number of Chromosomes | 1n = 4x = 32 |
| Total Length (bp) | 2,900,240,836 | N50 Length (bp) | 91,445,600 |
| Number of Genes | 53,284 | Number of Genes Source File | Saccharum_spontaneum.Sspon.HiC_chr_asm.pep.all.fa |
| Number of Genes Annotated by Hayai-annotation | 53,284 | Hayai-Annotation Version | zen_v2.0 |
| Sequencing Method | Illumina; PacBio RSII | Read Depth | 90.0x |
| Assembly Method | CANU v. May-2017; HiC v. May-2017 | Estimated Genome Size (Mb) | 3,360 |
| Sequencing Method Comments | NA | Comments | AP85-441 is a haploid (1n=4x=32) S. spontaneum generated from a culture of octoploid SES2086. |
| Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
| Corresponding author | Jisen Zhang (Fujian Agriculture and Forestry University), Ray Ming (ditto), Chifumi Nagai (Hawaii Agriculture Research Center) | Data Source | Ensembl |
| DOI/PMID | 10.1038/s41588-018-0237-2 | Data Source URL | http://plants.ensembl.org/index.html |
| BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
| BUSCO Genome | C:98.7%[S:9.0%,D:89.7%],F:0.6%,M:0.7%,n:1614 | BUSCO Gene (pep/cds) | C:75.9%[S:39.0%,D:36.9%],F:7.4%,M:16.7%,n:1614 |
