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アセンブル , シーケンス , Assemble , Sequence , Arabis alpina , Alpine rock cress , ヤマハタザオ

Arabis alpina

Genome Assembly ID:t50452.G001

Sequence Name:MPIPZ.v5

Details of the Assembled Genome Sequences

Assembly Name MPIPZ.v5 Biological Sample cv. Pajares
Number of Sequences 926 Number of Chromosomes 2n = 2x = 16
Total Length (bp) 336,719,365 N50 Length (bp) 36,598,175
Number of Genes 39,815 Number of Genes Source File A_alpina_V4.protein.fasta
Number of Genes Annotated by Hayai-annotation 39,815 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 454, Sanger Read Depth 86x
Assembly Method Newbler v. 2.9, SSPACE v. 1.2, BAMBUS v. 2.33 Estimated Genome Size (Mb) 375
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Korbinian Schneeberger (schneeberger@mpipz.mpg.de), George Coupland (coupland@mpipz.mpg.de) Data Source Genomic resources for Arabis alpina
DOI/PMID 10.1038/nplants.2014.23 Data Source URL http://www.arabis-alpina.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.3%[S:96.3%,D:3.0%],F:0.4%,M:0.3%,n:1614 BUSCO Gene (pep/cds) C:96.7%[S:87.9%,D:8.8%],F:1.8%,M:1.5%,n:1614

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