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アセンブル , シーケンス , Assemble , Sequence , Coffea canephora , Robusta coffee , コーヒー ロブスタ種

Coffea canephora

Genome Assembly ID:t49390.G001

Sequence Name:AUK_PRJEB4211_v1

Details of the Assembled Genome Sequences

Assembly Name AUK_PRJEB4211_v1 Biological Sample DH200-94
Number of Sequences 13,007 Number of Chromosomes 2n = 2x = 22
Total Length (bp) 568,611,505 N50 Length (bp) 29,137,935
Number of Genes 25,574 Number of Genes Source File Coffea_canephora.AUK_PRJEB4211_v1.pep.all.fa
Number of Genes Annotated by Hayai-annotation 25,574 Hayai-Annotation Version zen_v2.0
Sequencing Method illumina, Roche 454 Read Depth 24x
Assembly Method NA Estimated Genome Size (Mb) 710
Sequencing Method Comments NA Comments A doubled-haploid line
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Victor A. Albert (University at Buffalo), Patrick Wincker (Institut de Genomique), Philippe Lashermes (Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement (CIRAD), IRD, UM2)) Data Source Ensembl
DOI/PMID 10.1126/science.1255274 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.0%[S:96.8%,D:1.2%],F:1.0%,M:1.0%,n:1614 BUSCO Gene (pep/cds) C:94.2%[S:92.9%,D:1.3%],F:3.8%,M:2.0%,n:1614

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