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アセンブル , シーケンス , Assemble , Sequence , Lactuca sativa var. angustana , Lettuce , レタス (angustana変種)

Lactuca sativa

Genome Assembly ID:t4236.G002

Sequence Name:Stem_lettuce_genome.v1.1

Details of the Assembled Genome Sequences

Assembly Name Stem_lettuce_genome.v1.1 Biological Sample cv. YanLing
Number of Sequences 649 Number of Chromosomes 2n = 2x = 18
Total Length (bp) 2,620,626,119 N50 Length (bp) 332,303,623
Number of Genes 0 Number of Genes Source File Stem_lettuce_protein.v1.1c.fa
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio RS II, BioNano optical mapping, Hi-C Read Depth 105x (PacBio), 119x (BioNano), 108x (Hi-C)
Assembly Method Falcon v0.4, BioNano Solve v3.0.1, Juicer v1.5, 3D-DNA v201008 Estimated Genome Size (Mb) 2,540
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Xiaozeng Yang (Beijing Academy of Agriculture and Forestry Sciences) Data Source LettuceGDB
DOI/PMID 10.1038/s41467-023-40002-9 Data Source URL https://lettucegdb.cm/
BUSCO Version BUSCO Dataset
BUSCO Genome BUSCO Gene (pep/cds)

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