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アセンブル , シーケンス , Assemble , Sequence , Prunus avium , Sweet cherry , セイヨウミザクラ

Prunus avium

Genome Assembly ID:t42229.G003

Sequence Name:Prunus avium Tieton Genome v2.0

Details of the Assembled Genome Sequences

Assembly Name Prunus avium Tieton Genome v2.0 Biological Sample cv. Tieton
Number of Sequences 61 Number of Chromosomes 2n = 2x = 16
Total Length (bp) 344,341,978 N50 Length (bp) 42,624,765
Number of Genes 40,338 Number of Genes Source File Prunus_avium_Tieton.proteins.fa.gz
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, Oxford Nanopore, Hi-C Read Depth ~190x (Oxford Nanopore), 136x (Illumina)
Assembly Method MaSuRCA v3.3.440, Canu v1.841, wtdbg2 v2.5, NECAT v0.01 Estimated Genome Size (Mb) 340.05 (37-nt k-mer)
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Jiawei Wang (Shandong Institute of Pomology), Qingzhong Liu (ditto), Weizhen Liu (Wuhan University of Technology) Data Source GDR: Genome Database For Rosaceae
DOI/PMID 10.1038/s41438-020-00343-8. Data Source URL https://www.rosaceae.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:97.8%[S:91.7%,D:6.1%],F:0.7%,M:1.5%,n:1614 BUSCO Gene (pep/cds)

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Gene data has not been registered.

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