Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Atractylodes lancea , Southern Tsangshu, Southern Tsangshu , ソウジュツ, ホソバオケラ

Atractylodes lancea

Genome Assembly ID:t41486.G003

Sequence Name:ATLh2v3

Details of the Assembled Genome Sequences

Assembly Name ATLh2v3 Biological Sample Y-T16-69
Number of Sequences 138 Number of Chromosomes 2n = 2x = 24-26
Total Length (bp) 4,704,200,241 N50 Length (bp) 375,108,488
Number of Genes 75,682 Number of Genes Source File ATLh2v3_helixer.pep.fa
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio Hifi, Omni-C, Bionano Read Depth 34.1X
Assembly Method Hifiasm v0.16.1, OGM. YaHS Estimated Genome Size (Mb) 4,300
Sequencing Method Comments NA Comments Haploid resolved genome (hap2)
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Takahiro Tsusaka (Tsumura & Co) Data Source
DOI/PMID in preparation Data Source URL
BUSCO Version 5.5.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.7%[S:88.7%,D:10.0%],F:0.6%,M:0.7%,n:1614 BUSCO Gene (pep/cds) C:93.9%[S:85.6%,D:8.3%],F:3.8%,M:2.3%,n:1614

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format