Sequence Name:Otava haplotype St1
Assembly Name | Otava haplotype St1 | Biological Sample | Otava |
Number of Sequences | 22 | Number of Chromosomes | 2n = 4x = 48 |
Total Length (bp) | 774,059,002 | N50 Length (bp) | 70,076,311 |
Number of Genes | 38,214 | Number of Genes Source File | St1.prot.fa |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio HiFi Sequel II | Read Depth | 121.1x |
Assembly Method | hifiasm | Estimated Genome Size (Mb) | 3,375 |
Sequencing Method Comments | NA | Comments | Haplotype genome assembly inherited from 'Stieglitz' one of the parental cultivars of the tetraploid potato Otava |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Korbinian Schneeberger (Max Planck Institute for Plant Breeding Research) | Data Source | Spud DB Potato Genomics Resource |
DOI/PMID | 10.1038/s41588-022-01015-0 | Data Source URL | http://spuddb.uga.edu/index.shtml |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:96.4%[S:94.1%,D:2.3%],F:0.6%,M:3.0%,n:1614 | BUSCO Gene (pep/cds) | C:89.1%[S:86.9%,D:2.2%],F:2.8%,M:8.1%,n:1614 |