Sequence Name:Otava haplotype He2
Assembly Name | Otava haplotype He2 | Biological Sample | Otava |
Number of Sequences | 21 | Number of Chromosomes | 2n = 4x = 48 |
Total Length (bp) | 774,679,219 | N50 Length (bp) | 66,510,078 |
Number of Genes | 38,002 | Number of Genes Source File | He2.prot.fa |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio HiFi Sequel II | Read Depth | 121.1x |
Assembly Method | hifiasm | Estimated Genome Size (Mb) | 3,375 |
Sequencing Method Comments | NA | Comments | Haplotype genome assembly inherited from 'Hera' one of the parental cultivars of the tetraploid potato Otava |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Korbinian Schneeberger (Max Planck Institute for Plant Breeding Research) | Data Source | Spud DB Potato Genomics Resource |
DOI/PMID | 10.1038/s41588-022-01015-0 | Data Source URL | http://spuddb.uga.edu/index.shtml |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.1%[S:96.2%,D:1.9%],F:0.6%,M:1.3%,n:1614 | BUSCO Gene (pep/cds) | C:90.4%[S:88.0%,D:2.4%],F:3.0%,M:6.6%,n:1614 |