Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Solanum tuberosum , Potato , ジャガイモ

Solanum tuberosum

Genome Assembly ID:t4113.G004

Sequence Name:Otava haplotype He1

Details of the Assembled Genome Sequences

Assembly Name Otava haplotype He1 Biological Sample Otava
Number of Sequences 19 Number of Chromosomes 2n = 4x = 48
Total Length (bp) 764,153,483 N50 Length (bp) 68,307,457
Number of Genes 37,971 Number of Genes Source File He1.prot.fa
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio HiFi Sequel II Read Depth 121.1x
Assembly Method hifiasm Estimated Genome Size (Mb) 3,375
Sequencing Method Comments NA Comments Haplotype genome assembly inherited from 'Hera' one of the parental cultivars of the tetraploid potato Otava.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Korbinian Schneeberger (Max Planck Institute for Plant Breeding Research) Data Source Spud DB Potato Genomics Resource
DOI/PMID 10.1038/s41588-022-01015-0 Data Source URL http://spuddb.uga.edu/index.shtml
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.9%[S:96.8%,D:2.1%],F:0.4%,M:0.7%,n:1614 BUSCO Gene (pep/cds) C:92.3%[S:89.1%,D:3.2%],F:2.4%,M:5.3%,n:1614

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format