Sequence Name:Otava haplotype He1
Assembly Name | Otava haplotype He1 | Biological Sample | Otava |
Number of Sequences | 19 | Number of Chromosomes | 2n = 4x = 48 |
Total Length (bp) | 764,153,483 | N50 Length (bp) | 68,307,457 |
Number of Genes | 37,971 | Number of Genes Source File | He1.prot.fa |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio HiFi Sequel II | Read Depth | 121.1x |
Assembly Method | hifiasm | Estimated Genome Size (Mb) | 3,375 |
Sequencing Method Comments | NA | Comments | Haplotype genome assembly inherited from 'Hera' one of the parental cultivars of the tetraploid potato Otava. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Korbinian Schneeberger (Max Planck Institute for Plant Breeding Research) | Data Source | Spud DB Potato Genomics Resource |
DOI/PMID | 10.1038/s41588-022-01015-0 | Data Source URL | http://spuddb.uga.edu/index.shtml |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.9%[S:96.8%,D:2.1%],F:0.4%,M:0.7%,n:1614 | BUSCO Gene (pep/cds) | C:92.3%[S:89.1%,D:3.2%],F:2.4%,M:5.3%,n:1614 |