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アセンブル , シーケンス , Assemble , Sequence , Solanum tuberosum , Potato , ジャガイモ

Solanum tuberosum

Genome Assembly ID:t4113.G003

Sequence Name:DM_1-3_516_R44_potato_genome_assembly.v6.1

Details of the Assembled Genome Sequences

Assembly Name DM_1-3_516_R44_potato_genome_assembly.v6.1 Biological Sample DM1-3 516 R44
Number of Sequences 288 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 741,585,035 N50 Length (bp) 59,670,755
Number of Genes 32,917 Number of Genes Source File DM_1-3_516_R44_potato.v6.1.repr_hc_gene_models.pep.fa
Number of Genes Annotated by Hayai-annotation 32,917 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, Nanopore, Hi-C Read Depth 45x
Assembly Method Flye v2.5, Racon v1.3.2, Nanopolish v0.11.1, Pilon v1.23 Estimated Genome Size (Mb) 844
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author C. Robin Buell (Michigan State University) Data Source Spud DB Potato Genomics Resource
DOI/PMID 10.1093/gigascience/giaa100 Data Source URL http://potato.plantbiology.msu.edu/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.4%[S:97.5%,D:1.9%],F:0.2%,M:0.4%,n:1614 BUSCO Gene (pep/cds) C:92.9%[S:91.3%,D:1.6%],F:5.0%,M:2.1%,n:1614

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