Sequence Name:DM_1-3_516_R44_potato_genome_assembly.v6.1
Assembly Name | DM_1-3_516_R44_potato_genome_assembly.v6.1 | Biological Sample | DM1-3 516 R44 |
Number of Sequences | 288 | Number of Chromosomes | 2n = 2x = 24 |
Total Length (bp) | 741,585,035 | N50 Length (bp) | 59,670,755 |
Number of Genes | 32,917 | Number of Genes Source File | DM_1-3_516_R44_potato.v6.1.repr_hc_gene_models.pep.fa |
Number of Genes Annotated by Hayai-annotation | 32,917 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, Nanopore, Hi-C | Read Depth | 45x |
Assembly Method | Flye v2.5, Racon v1.3.2, Nanopolish v0.11.1, Pilon v1.23 | Estimated Genome Size (Mb) | 844 |
Sequencing Method Comments | NA | Comments | NA |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | C. Robin Buell (Michigan State University) | Data Source | Spud DB Potato Genomics Resource |
DOI/PMID | 10.1093/gigascience/giaa100 | Data Source URL | http://potato.plantbiology.msu.edu/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:99.4%[S:97.5%,D:1.9%],F:0.2%,M:0.4%,n:1614 | BUSCO Gene (pep/cds) | C:92.9%[S:91.3%,D:1.6%],F:5.0%,M:2.1%,n:1614 |