Sequence Name:DM_v4.03
Assembly Name | DM_v4.03 | Biological Sample | DM1-3 516 R44 |
Number of Sequences | 13 | Number of Chromosomes | 2n = 2x = 24 |
Total Length (bp) | 773,029,432 | N50 Length (bp) | 59,756,223 |
Number of Genes | 56,215 | Number of Genes Source File | Stuberosum_448_v4.03.protein.fa |
Number of Genes Annotated by Hayai-annotation | 56,215 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Sanger, Illumina, 454 | Read Depth | NA |
Assembly Method | SOAPdenovo v. 1014, SOAP 2.20, SSAHA2 | Estimated Genome Size (Mb) | 954 |
Sequencing Method Comments | NA | Comments | DM1-3 516 R44 resulted from chromosome doubling of a monoploid(1n=12) derived by anther culture of a heterozygous diploid (2n=24) S. tuberosum group Phureja clone (PI 225669). It is weakly growing, flowering, and hardly produces any tubers. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Glenn J. Bryan (The James Hutton Institute) | Data Source | Phytozome |
DOI/PMID | 10.1534/g3.113.007153 | Data Source URL | https://phytozome.jgi.doe.gov/pz/portal.html |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:99.3%[S:97.6%,D:1.7%],F:0.3%,M:0.4%,n:1614 | BUSCO Gene (pep/cds) | C:74.6%[S:53.5%,D:21.1%],F:5.6%,M:19.8%,n:1614 |