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アセンブル , シーケンス , Assemble , Sequence , Solanum tuberosum , Potato , ジャガイモ

Solanum tuberosum

Genome Assembly ID:t4113.G001

Sequence Name:DM_v4.03

Details of the Assembled Genome Sequences

Assembly Name DM_v4.03 Biological Sample DM1-3 516 R44
Number of Sequences 13 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 773,029,432 N50 Length (bp) 59,756,223
Number of Genes 56,215 Number of Genes Source File Stuberosum_448_v4.03.protein.fa
Number of Genes Annotated by Hayai-annotation 56,215 Hayai-Annotation Version zen_v2.0
Sequencing Method Sanger, Illumina, 454 Read Depth NA
Assembly Method SOAPdenovo v. 1014, SOAP 2.20, SSAHA2 Estimated Genome Size (Mb) 954
Sequencing Method Comments NA Comments DM1-3 516 R44 resulted from chromosome doubling of a monoploid(1n=12) derived by anther culture of a heterozygous diploid (2n=24) S. tuberosum group Phureja clone (PI 225669). It is weakly growing, flowering, and hardly produces any tubers.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Glenn J. Bryan (The James Hutton Institute) Data Source Phytozome
DOI/PMID 10.1534/g3.113.007153 Data Source URL https://phytozome.jgi.doe.gov/pz/portal.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.3%[S:97.6%,D:1.7%],F:0.3%,M:0.4%,n:1614 BUSCO Gene (pep/cds) C:74.6%[S:53.5%,D:21.1%],F:5.6%,M:19.8%,n:1614

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