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アセンブル , シーケンス , Assemble , Sequence , Capsicum annuum var. glabriusculum , Wild chili pepper (glabriusculum), Chiltepin , トウガラシ野生種 (glabriusculum変種)

Capsicum annuum

Genome Assembly ID:t4072.G001

Sequence Name:Capsicum.annuum.var.glabriusculum_Chiltepin_Release_2.0

Details of the Assembled Genome Sequences

Assembly Name Capsicum.annuum.var.glabriusculum_Chiltepin_Release_2.0 Biological Sample var. glabriusculum, common-name Chiltepin
Number of Sequences 13 Number of Chromosomes 2n = 2x = 24
Total Length (bp) 3,528,040,346 N50 Length (bp) 229,064,124
Number of Genes 34,476 Number of Genes Source File Capsicum.annuum.var.glabriusculum_Chiltepin_v2.0_PEP.fasta
Number of Genes Annotated by Hayai-annotation 34,476 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth 66x
Assembly Method SOAPdenovo v. 1.06 Estimated Genome Size (Mb) 3,070
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Luis Herrera-Estrella (Centro de Investigacion y de Estudios Avanzados del Instituto Politecnico Nacional), Ye Yin (Beijing Genomics Institute-Shenzhen), Jiping Yu (Zunyi Academy of Agricultural Sciences), Kailin Hu (South China Agricultural University), Z Data Source Pepper Genome Database website
DOI/PMID 10.1073/pnas.1400975111 Data Source URL http://peppersequence.genomics.cn
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:97.0%[S:94.7%,D:2.3%],F:1.9%,M:1.1%,n:1614 BUSCO Gene (pep/cds) C:78.5%[S:75.5%,D:3.0%],F:10.6%,M:10.9%,n:1614

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