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アセンブル , シーケンス , Assemble , Sequence , Daucus carota , Carrot , ニンジン

Daucus carota

Genome Assembly ID:t4039.G001

Sequence Name:Dcarota_388_v2.0

Details of the Assembled Genome Sequences

Assembly Name Dcarota_388_v2.0 Biological Sample DH1
Number of Sequences 4,826 Number of Chromosomes 2n = 2x = 18
Total Length (bp) 421,502,825 N50 Length (bp) 36,610,139
Number of Genes 32,118 Number of Genes Source File Dcarota_388_v2.0.protein.fa
Number of Genes Annotated by Hayai-annotation 32,118 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 454, Sanger Read Depth 186x
Assembly Method SOAPdenovo v. 2.04, GapCloser for SOAPdenovo v. 1.12, integration with linkage maps v. NOV-2013 Estimated Genome Size (Mb) 473
Sequencing Method Comments NA Comments An orange, doubled-haploid, Nantes-type carrot
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Philipp Simon (University of Wisconsin_Madison) Data Source Phytozome
DOI/PMID 10.1038/ng.3565 Data Source URL https://phytozome.jgi.doe.gov/pz/portal.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.5%[S:94.3%,D:4.2%],F:0.7%,M:0.8%,n:1614 BUSCO Gene (pep/cds) C:85.4%[S:81.7%,D:3.7%],F:6.1%,M:8.5%,n:1614

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