Sequence Name:Dcarota_388_v2.0
Assembly Name | Dcarota_388_v2.0 | Biological Sample | DH1 |
Number of Sequences | 4,826 | Number of Chromosomes | 2n = 2x = 18 |
Total Length (bp) | 421,502,825 | N50 Length (bp) | 36,610,139 |
Number of Genes | 32,118 | Number of Genes Source File | Dcarota_388_v2.0.protein.fa |
Number of Genes Annotated by Hayai-annotation | 32,118 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, 454, Sanger | Read Depth | 186x |
Assembly Method | SOAPdenovo v. 2.04, GapCloser for SOAPdenovo v. 1.12, integration with linkage maps v. NOV-2013 | Estimated Genome Size (Mb) | 473 |
Sequencing Method Comments | NA | Comments | An orange, doubled-haploid, Nantes-type carrot |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Philipp Simon (University of Wisconsin_Madison) | Data Source | Phytozome |
DOI/PMID | 10.1038/ng.3565 | Data Source URL | https://phytozome.jgi.doe.gov/pz/portal.html |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.5%[S:94.3%,D:4.2%],F:0.7%,M:0.8%,n:1614 | BUSCO Gene (pep/cds) | C:85.4%[S:81.7%,D:3.7%],F:6.1%,M:8.5%,n:1614 |