Sequence Name:hevea
Assembly Name | hevea | Biological Sample | RRIM 600 |
Number of Sequences | 189,316 | Number of Chromosomes | 2n = 2x = 36 |
Total Length (bp) | 1,550,675,561 | N50 Length (bp) | 67,241 |
Number of Genes | 84,443 | Number of Genes Source File | hevea_amino.fasta |
Number of Genes Annotated by Hayai-annotation | 84,443 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | illumina, PacBio | Read Depth | 155 x |
Assembly Method | Platanus v. 1.2.1, PBJelly v. 14.9.9 | Estimated Genome Size (Mb) | NA |
Sequencing Method Comments | NA | Comments | RRIM 600, a secondary clone originally developed from clones Tijr 1 and PB 86, is the most widely planted in Malaysia and Thailand. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Alexander Chong Shu-Chien (Universiti Sains Malaysia), Minami Matsui (RIKEN Center for Sustainable Resource Science) | Data Source | Rubber Genome & Transcriptome Database |
DOI/PMID | 10.1038/srep28594 | Data Source URL | http://rubber.riken.jp/rubber/home.html |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:97.2%[S:84.1%,D:13.1%],F:1.3%,M:1.5%,n:1614 | BUSCO Gene (pep/cds) | C:89.8%[S:78.6%,D:11.2%],F:6.6%,M:3.6%,n:1614 |