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アセンブル , シーケンス , Assemble , Sequence , Hevea brasiliensis , Rubber tree , パラゴムノキ

Hevea brasiliensis

Genome Assembly ID:t3981.G002

Sequence Name:hevea

Details of the Assembled Genome Sequences

Assembly Name hevea Biological Sample RRIM 600
Number of Sequences 189,316 Number of Chromosomes 2n = 2x = 36
Total Length (bp) 1,550,675,561 N50 Length (bp) 67,241
Number of Genes 84,443 Number of Genes Source File hevea_amino.fasta
Number of Genes Annotated by Hayai-annotation 84,443 Hayai-Annotation Version zen_v2.0
Sequencing Method illumina, PacBio Read Depth 155 x
Assembly Method Platanus v. 1.2.1, PBJelly v. 14.9.9 Estimated Genome Size (Mb) NA
Sequencing Method Comments NA Comments RRIM 600, a secondary clone originally developed from clones Tijr 1 and PB 86, is the most widely planted in Malaysia and Thailand.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Alexander Chong Shu-Chien (Universiti Sains Malaysia), Minami Matsui (RIKEN Center for Sustainable Resource Science) Data Source Rubber Genome & Transcriptome Database
DOI/PMID 10.1038/srep28594 Data Source URL http://rubber.riken.jp/rubber/home.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:97.2%[S:84.1%,D:13.1%],F:1.3%,M:1.5%,n:1614 BUSCO Gene (pep/cds) C:89.8%[S:78.6%,D:11.2%],F:6.6%,M:3.6%,n:1614

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