Sequence Name:VSA_r1.0
Assembly Name | VSA_r1.0 | Biological Sample | KSR5 |
Number of Sequences | 54,083 | Number of Chromosomes | 2n = 2x = 14 |
Total Length (bp) | 1,541,180,487 | N50 Length (bp) | 90,105 |
Number of Genes | 31,146 | Number of Genes Source File | VSA_r1.0.proteins.noTE.rm_partial.fasta |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina HiSeq2000, PacBio RS II | Read Depth | 216x |
Assembly Method | SOAPdenovo2, PBJelly | Estimated Genome Size (Mb) | 1,769 |
Sequencing Method Comments | NA | Comments | NA |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Kenta Shirasawa (Kazusa DNA Research Institute) | Data Source | Plant GARDEN |
DOI/PMID | 10.1101/2021.03.09.434686 | Data Source URL | https://plantgarden.jp/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:97.8%[S:95.6%,D:2.2%],F:1.4%,M:0.8%,n:1614 | BUSCO Gene (pep/cds) | C:86.3%[S:84.8%,D:1.5%],F:6.6%,M:7.1%,n:1614 |