Sequence Name:Aet v5.0
Assembly Name | Aet v5.0 | Biological Sample | subsp. strangulata,, cv. AL8/78 |
Number of Sequences | 109,197 | Number of Chromosomes | 2n = 2x = 14 |
Total Length (bp) | 4,218,179,011 | N50 Length (bp) | 576,238,907 |
Number of Genes | 58,655 | Number of Genes Source File | GCF_002575655.2_Aet_v5.0_protein.faa.gz |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | BioNano optical maps | Read Depth | NA |
Assembly Method | Bionano Assembler | Estimated Genome Size (Mb) | NA |
Sequencing Method Comments | NA | Comments | Mis-assemblies in version Aet v4.0 (line95) were corrected with optical maps and gaps were closed using contigs (10.1101/gr.213405.116) assembled from whole-genome-shotgun (WGS) PacBio reads. Assembly revision: BioNano optical maps; Gap closing: PacBio. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Jan Dvorak (University of California Davis) | Data Source | NCBI |
DOI/PMID | 10.1093/g3journal/jkab325 | Data Source URL | https://www.ncbi.nlm.nih.gov/ |
BUSCO Version | BUSCO Dataset | ||
BUSCO Genome | BUSCO Gene (pep/cds) |