Sequence Name:Malus_x_domestica_Honeycrisp_HAP1_v1.1.a1
Assembly Name | Malus_x_domestica_Honeycrisp_HAP1_v1.1.a1 | Biological Sample | cv. Honeycrisp |
Number of Sequences | 456 | Number of Chromosomes | 2n = 2x = 34 |
Total Length (bp) | 674,476,353 | N50 Length (bp) | 35,818,875 |
Number of Genes | 50,105 | Number of Genes Source File | g.Honeycrisp_HAP1_braker1+2_combined_fullSupport_longname_filtered.pep.fa.gz |
Number of Genes Annotated by Hayai-annotation | 0 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio Sequel II | Read Depth | 55x |
Assembly Method | hifiasm v0.16.1, Juicer pipeline v1.6 | Estimated Genome Size (Mb) | NA |
Sequencing Method Comments | NA | Comments | NA |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Loren Honaas (USDA ARS Tree Fruit Research Lab) | Data Source | GIGA DB |
DOI/PMID | 10.46471/gigabyte.69 | Data Source URL | http://gigadb.org/ |
BUSCO Version | 5.8.2 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:99.1%[S:58.1%,D:41.0%],F:0.4%,M:0.5%,n:1614 | BUSCO Gene (pep/cds) | C:97.1%[S:61.6%,D:35.6%],F:0.9%,M:2.0%,n:1614 |