Sequence Name:Brassica_oleracea_capitata_v3_1
Assembly Name | Brassica_oleracea_capitata_v3_1 | Biological Sample | var. capitata, double-haploid line D134, Cabbage |
Number of Sequences | 682 | Number of Chromosomes | 2n = 2x = 18 |
Total Length (bp) | 574,907,288 | N50 Length (bp) | 57,729,012 |
Number of Genes | 43,868 | Number of Genes Source File | Brassica_oleracea_capitata_D134-protein.fa.gz |
Number of Genes Annotated by Hayai-annotation | 43,868 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio, 10x, Hi-C, illumina | Read Depth | 98x |
Assembly Method | ALLPATHS-LG, PBcR wgs8.3rc1, FALCON, Quiver, Pilon, BWA-MEM | Estimated Genome Size (Mb) | 660 |
Sequencing Method Comments | NA | Comments | Cabbage double-haploid line D134, with excellent horticultural characteristics including early maturity, green leaf color, and high resistance to Fusarium wilt, has been used constantly in cabbage breeding. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Yangyong Zhang (Ministry of Agriculture), Limei Yang(ditto) | Data Source | CNGBdb: China National GeneBank DataBase |
DOI/PMID | 10.1038/s41598-020-69389-x | Data Source URL | https://db.cngb.org/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:99.5%[S:84.0%,D:15.5%],F:0.2%,M:0.3%,n:1614 | BUSCO Gene (pep/cds) | C:96.7%[S:82.7%,D:14.0%],F:1.0%,M:2.3%,n:1614 |