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アセンブル , シーケンス , Assemble , Sequence , Brassica oleracea var. capitata , Cabbage , キャベツ (capitata変種)

Brassica oleracea

Genome Assembly ID:t3712.G004

Sequence Name:Brassica_oleracea_capitata_v3_1

Details of the Assembled Genome Sequences

Assembly Name Brassica_oleracea_capitata_v3_1 Biological Sample var. capitata, double-haploid line D134, Cabbage
Number of Sequences 682 Number of Chromosomes 2n = 2x = 18
Total Length (bp) 574,907,288 N50 Length (bp) 57,729,012
Number of Genes 43,868 Number of Genes Source File Brassica_oleracea_capitata_D134-protein.fa.gz
Number of Genes Annotated by Hayai-annotation 43,868 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, 10x, Hi-C, illumina Read Depth 98x
Assembly Method ALLPATHS-LG, PBcR wgs8.3rc1, FALCON, Quiver, Pilon, BWA-MEM Estimated Genome Size (Mb) 660
Sequencing Method Comments NA Comments Cabbage double-haploid line D134, with excellent horticultural characteristics including early maturity, green leaf color, and high resistance to Fusarium wilt, has been used constantly in cabbage breeding.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Yangyong Zhang (Ministry of Agriculture), Limei Yang(ditto) Data Source CNGBdb: China National GeneBank DataBase
DOI/PMID 10.1038/s41598-020-69389-x Data Source URL https://db.cngb.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.5%[S:84.0%,D:15.5%],F:0.2%,M:0.3%,n:1614 BUSCO Gene (pep/cds) C:96.7%[S:82.7%,D:14.0%],F:1.0%,M:2.3%,n:1614

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