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アセンブル , シーケンス , Assemble , Sequence , Populus trichocarpa , Poplar , ポプラ (trichocarpa種), ブラックコットンウッド

Populus trichocarpa

Genome Assembly ID:t3694.G001

Sequence Name:Pop_tri_v4.0

Details of the Assembled Genome Sequences

Assembly Name Pop_tri_v4.0 Biological Sample Nisqually-1
Number of Sequences 46 Number of Chromosomes 2n = 2x = 38
Total Length (bp) 392,162,179 N50 Length (bp) 21,678,634
Number of Genes 52,400 Number of Genes Source File Ptrichocarpa_533_v4.1.protein.fa
Number of Genes Annotated by Hayai-annotation 52,400 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, Sanger Read Depth 8x
Assembly Method ARACHNE_modified v. 200721016 Estimated Genome Size (Mb) 485
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author G. A. Tuskan (Oak Ridge National Laboratory) Data Source Phytozome
DOI/PMID 10.1126/science.1128691 Data Source URL https://phytozome.jgi.doe.gov/pz/portal.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.8%[S:82.4%,D:16.4%],F:0.5%,M:0.7%,n:1614 BUSCO Gene (pep/cds) C:99.2%[S:60.8%,D:38.4%],F:0.2%,M:0.6%,n:1614

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