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アセンブル , シーケンス , Assemble , Sequence , Cucurbita pepo subsp. pepo , Zucchini (pepo) , ズッキーニ (pepo変種)

Cucurbita pepo

Genome Assembly ID:t3663.G001

Sequence Name:Cpepp_v4.1

Details of the Assembled Genome Sequences

Assembly Name Cpepp_v4.1 Biological Sample subsp. pepo, cv. mu-cu-16
Number of Sequences 21 Number of Chromosomes 2n = 2x = 40
Total Length (bp) 263,379,835 N50 Length (bp) 10,677,745
Number of Genes 27,868 Number of Genes Source File Cpepo_v4.1.protein.fa
Number of Genes Annotated by Hayai-annotation 27,868 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth 198x
Assembly Method SOAPdenovo v. r240, BreakScaffolds v. git, SSPADE v. 3.0 Estimated Genome Size (Mb) 283
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Joaquin Canizares(Universitat Politecnica de Valencia), Belen Pico(ditto) Data Source CuGenDB
DOI/PMID 10.1111/pbi.12860 Data Source URL http://cucurbitgenomics.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.3%[S:82.3%,D:16.0%],F:0.7%,M:1.0%,n:1614 BUSCO Gene (pep/cds) C:90.6%[S:76.5%,D:14.1%],F:2.5%,M:6.9%,n:1614

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